Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1179 ATGTCGGTAAAAGAGTGTGACCACCACAGGAGAAGGCGCCGGGAAATCTTCCGAAGACTCTTTGCCTGTATCCTTATATTCCTGTTCATAGTGCTGCTCATCATTCTCATAATCTGGGCAATCCTCAGGCCATCCAAGCCTTCCTTCATCCTCCAAGACGTCACCCTATACGCCTTCAATGCCAGCGTCCCCAACCTCCTCACCTCAAACTTCCAAATCACCCTCTCTTCCCGCAACCCAAACGACAAGATCGGAATCTACTACGACCGTCTCGACACTTACGTGGATTACCGCAACCAGCAAGTGACGTATCGTACCTCCATCCCACCCTCCTATCAGGGTCACAAAGAGGTGGACGTCTGGTCACCCTTCGTCTATGGAACCAACGTACCCGTAGCTCCTTACAACTTCGACGCACTCGGCCAGGATCAGTCCAACGGCAACGTTATGGTAACCGTCAAGATCGACGGACGGGTCAGATGGAAAGTTGGGACCTTCATTTCTGGACATTACCATCTATACGTGCGGTGCCCCGCTTATATTACTTTTGGGGCCGGCAGCTCTGGAATTGCTGTCGGCCGAAACGCCGTTAAGTATCAAATGGTCCGGCGATGCTTTTATTGTGGGATGGGGGCACGTGGAGGAAGTGATGGCGATCGAGGCCTGTTGGAAATGGAAGGCATGCAACCCCTCATCTTCGTCTTCTCGCAACAAATAACCCCTGACCACTTCATCATCATCCTTGTAGTTTCGTCCATGGCTGACAAGCAACCCCAATTGAACGGTGCCTACTACGGTCCCTCCATTCCACCAGCGGAGCAACCCCGCCCCCGCTATCGCCGCAGCAGAAGCTGCTGTTGCTGTCTTTTCGGCATCTTCTGGAAGCTCCTCCTCGCACTCATTGTCATCGTTGGCCTCGCAATCCTCATCTTCTGGCTCATCGTCCGTCCCCGGCCCTTCAAGTTTTACGTGTCGGAAGCCAAGCTCACCCAATTTGACTACGCCAACAACACCCTCCGATACGACCTTGTCCTCAACTTCACCGCACGTAATCCCAACAAAAAGTTAAGCATCTACTACGATAAGGTGGAGGGCTGGGCATTCTACGAGGGCCAGAGGTTCGATATCACCGACGTCATCACCCACATGAACTCTTTCCGCCAATACAAGAAGAGCTCCGATCCAATGAGCGGTGTGTTCTCGGGGCAGCAGGTGATGGTGCTCGATGGCGAAGACCTCTCCCACTACAATGAAGACAAGACAAGTGGAGTATTTAACATTGGCGTGAAGCTATACTTCAGGATAAGGTTCAGGCTGGGGGATTTCATAACCCGGCACTACAAACCCAAGGTCAAATGTGAACTCAACGTTCCTTTGAGTTCTAACGGCTCAACACTCCACGGATTTGAATCCACAAAGTGTGATGTCGATTTCTGA 1437 0.5184 MSVKECDHHRRRRREIFRRLFACILIFLFIVLLIILIIWAILRPSKPSFILQDVTLYAFNASVPNLLTSNFQITLSSRNPNDKIGIYYDRLDTYVDYRNQQVTYRTSIPPSYQGHKEVDVWSPFVYGTNVPVAPYNFDALGQDQSNGNVMVTVKIDGRVRWKVGTFISGHYHLYVRCPAYITFGAGSSGIAVGRNAVKYQMVRRCFYCGMGARGGSDGDRGLLEMEGMQPLIFVFSQQITPDHFIIILVVSSMADKQPQLNGAYYGPSIPPAEQPRPRYRRSRSCCCCLFGIFWKLLLALIVIVGLAILIFWLIVRPRPFKFYVSEAKLTQFDYANNTLRYDLVLNFTARNPNKKLSIYYDKVEGWAFYEGQRFDITDVITHMNSFRQYKKSSDPMSGVFSGQQVMVLDGEDLSHYNEDKTSGVFNIGVKLYFRIRFRLGDFITRHYKPKVKCELNVPLSSNGSTLHGFESTKCDVDF 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1179 478 PANTHER OS05G0367900 PROTEIN 18 191 IPR044839 GO:0098542
Glsi11g1179 478 Pfam Late embryogenesis abundant protein 347 453 IPR004864 -
Glsi11g1179 478 Pfam Late embryogenesis abundant protein 74 177 IPR004864 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1179 Glsi-ChrGlsi11 7387876 7391142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1179 314 467 SNARE and Associated Proteins AT1G32270 34.177 1.37e-19 88.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2542 02 75229270 75230161 Glsi11g1179 11 7387876 7391142 CCT
Glsi11g1179 11 7387876 7391142 Glsi11g1179 11 7387876 7391142 ECH