Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1171 ATGTCCGGCGGCGTTGGAGCTTCAAACCGACAGGCATCGCCGCCGGAGGCGGCTTCCACCGTCCAGAATCGGCCGCCACTGAAGCGTCACCTGGCGTTCGCATCCACTAAGCCGCCATTTATTCCCTCAGATGATTATCACAGCTTCTCGGCTTCCGACTCTAGGAGAGCTGCTGATCAAGAGGCTGAAGCTGTTGTTGTTAGATCTCCATACATGAAGCGGAAGAGTGGAGTGAATGACAACAATGGAGAGTCACAGGAATGGAGTAACAGCCCTGGACATACTAATGTGATGAGTAGTCCCTTCAAAACTCCTGTGTCTGCAAAAGCGGGAAGGACATACAATAAGTCAAAGGTTTCCAAGGAAGGCAGATCTGGTCCTCAGACCCCCATCTCAAATGCTGGTTCCCCTTCTCTTACGCCTGCTGGCAACTGTCGATATGACAGTTCCTTAGGTCTATTGACAAAAAAGTTTATCAATTTGCTCAAGCATGCAGAGGATGGTGATCTTGACCTAAATAAAGCAGCAGAAACTTTGGAGGTGCAAAAGAGGAGGATATATGACATTACCAATGTTTTGGAAGGAATTGGTCTCATTGAGAAAAAGCTCAAAAATAGAATACATTGGAAGGGAATTGATTCTTCTACATCTGGAGAGGTGGATGGTGATGTCTCTACACTGAAGGCAGAAGTTGAGAGGCTTTCATTGGAAGAGCACAGATTAGATGATCAAATAAGGGGAATGCAAGAAAGGCTGAGGAGTTTGAGCGAAGATGAAAAAAACCAGAAGTGGCTTTTTGTAACCGAAGAAGATATCAAGGGCCTACCCTGCTTCCAGAATGAAACTCTAATAGCAATTAAAGCCCCACATGGAACCACCTTGGAAGTCCCCGATCCTGAGGAAGCTGTTGACTATCCACAGAGAAGATATAGAATCATTCTTAGAAGCACAATGGGTCCCATTGACGTCTACCTTGTCAGTCAATTTGAGGAGAAGTTTGAAGAAACGAATGACATTGAGCCCCCCAGGAACTTCCCACTTGCTTCAAGTTCAGGGTCCAATGAACACCTAACAACAGAAATGGTTCCTGTTGAACGCAATGCAAAGGGACTTGAACCTCAGACTCAACTCTCTTCTCATACGTGTTCTGATCTAAATGATTCACAAGAGTTTGGTGGGGGCATTATGAAAATTGTTCCTTCTGATGTTGATAATGATGCAGATTATTGGCTTCTATCAGATGCTGAAGTTAGCATTACAGACATGTGGAGAACAGATTCTAGTGTTGATTGGAATGGGGTGGACATGCTTCATCCTGACTTTGGAATAATCTCAAGGCCACAAACTCCATCGTCTGGGTGTGCTGAAGGACCATCCGCATTAGCTGACTCTACTCAAAAGTGA 1404 0.4523 MSGGVGASNRQASPPEAASTVQNRPPLKRHLAFASTKPPFIPSDDYHSFSASDSRRAADQEAEAVVVRSPYMKRKSGVNDNNGESQEWSNSPGHTNVMSSPFKTPVSAKAGRTYNKSKVSKEGRSGPQTPISNAGSPSLTPAGNCRYDSSLGLLTKKFINLLKHAEDGDLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIDSSTSGEVDGDVSTLKAEVERLSLEEHRLDDQIRGMQERLRSLSEDEKNQKWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLVSQFEEKFEETNDIEPPRNFPLASSSGSNEHLTTEMVPVERNAKGLEPQTQLSSHTCSDLNDSQEFGGGIMKIVPSDVDNDADYWLLSDAEVSITDMWRTDSSVDWNGVDMLHPDFGIISRPQTPSSGCAEGPSALADSTQK 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1171 467 FunFam E2F transcription factor 1 140 213 - -
Glsi11g1171 467 MobiDBLite consensus disorder prediction 1 20 - -
Glsi11g1171 467 Gene3D - 140 213 IPR036388 -
Glsi11g1171 467 MobiDBLite consensus disorder prediction 1 142 - -
Glsi11g1171 467 MobiDBLite consensus disorder prediction 445 467 - -
Glsi11g1171 467 PANTHER TRANSCRIPTION FACTOR E2F 77 429 IPR015633 GO:0000978|GO:0006357
Glsi11g1171 467 MobiDBLite consensus disorder prediction 444 467 - -
Glsi11g1171 467 CDD E2F_DD 224 328 IPR032198 GO:0046983
Glsi11g1171 467 Pfam E2F transcription factor CC-MB domain 227 327 IPR032198 GO:0046983
Glsi11g1171 467 MobiDBLite consensus disorder prediction 110 142 - -
Glsi11g1171 467 SUPERFAMILY E2F-DP heterodimerization region 224 328 IPR037241 -
Glsi11g1171 467 SMART E2F_TDP_2 146 211 IPR003316 GO:0005667|GO:0006355
Glsi11g1171 467 SUPERFAMILY "Winged helix" DNA-binding domain 146 209 IPR036390 -
Glsi11g1171 467 Coils Coil 224 258 - -
Glsi11g1171 467 Pfam E2F/DP family winged-helix DNA-binding domain 148 211 IPR003316 GO:0005667|GO:0006355
Glsi11g1171 467 Gene3D - 218 328 - -
Glsi11g1171 467 MobiDBLite consensus disorder prediction 75 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1171 Glsi-ChrGlsi11 7326451 7331077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1171 25 467 E2F-DP Transcription Factor Family AT2G36010 59.488 4.94e-173 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Glsi11g1171 E2F_CC-MB 1.3e-34 No_clan