Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1157 ATGGGTCCGATAAAACATACAGATATTCATCAAGCAGTTGCTGTTAGTGTAATAAATAGCGAATCCTCCTCGATGGCTCCAATTGCAAGAAGTGTCAAAGCACGCAGTGGTGAGGCTGACGAAGAACTTGTGCGTGGAGCTAGGAGGGCATGGTATATGAGTGAATTGCATATCTCCGAGGGCAGTTCTGACTCCATTTGTAAACAATTCGTTGAGAATAGACAAGAGGGTGACAGAGAAAGTGCTGGGGGTTATGTCAAAAGGCTAGCTTCTTCCATATTTTCACCCGATTCTCGACCTCCTTCCTCCGAGCTCGGCAGTCTTCCCAGAGCCACCATGGGACGTGTCCGTACCAAGACGGTGAAGAAATCTTCGCGCCAAGTCATCGAGAGGTACTACTCTCGAATGACATTGGATTTTCATACCAACAAAAAAATTCTTGAGGAGGTGGCTCTCATACCCTCCAAGAGGCTCCGCAACAAGATCGCTGGATTTTCTACTCATCTGATGAAGAGGATTCAGAAGGGTCCTGTCCGTGGAATTTCTCTCAAACTCCAAGAGGAGGAGCGGGAGCGCCGGATGGACTTTGTGCCCGATGTTTCAGCTATCAAGACTGAGCAGATTGAGGTTGACAAGGAGACCCTTGACATGCTCAGTGCTCTTGGAATGAACGATATTCCTGGCCTCGTCCAAGTTGAACCAGTGCCTGTGCAGCAGCAGGTCGGATTTGGTCGTGGTGGTTTTGGTGCGGCTGGTCGGAGGTATTAG 768 0.4909 MGPIKHTDIHQAVAVSVINSESSSMAPIARSVKARSGEADEELVRGARRAWYMSELHISEGSSDSICKQFVENRQEGDRESAGGYVKRLASSIFSPDSRPPSSELGSLPRATMGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTEQIEVDKETLDMLSALGMNDIPGLVQVEPVPVQQQVGFGRGGFGAAGRRY 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1157 255 FunFam 40S ribosomal protein S17 113 174 - -
Glsi11g1157 255 Gene3D - 113 174 IPR036401 GO:0003735|GO:0005840|GO:0006412
Glsi11g1157 255 SUPERFAMILY Rps17e-like 113 174 IPR036401 GO:0003735|GO:0005840|GO:0006412
Glsi11g1157 255 ProSitePatterns Ribosomal protein S17e signature. 153 168 IPR018273 GO:0003735|GO:0005840|GO:0006412
Glsi11g1157 255 MobiDBLite consensus disorder prediction 93 116 - -
Glsi11g1157 255 Hamap 30S ribosomal protein S17e [rps17e]. 113 175 IPR001210 GO:0003735|GO:0005840|GO:0006412
Glsi11g1157 255 PANTHER 40S RIBOSOMAL PROTEIN S17 113 239 IPR001210 GO:0003735|GO:0005840|GO:0006412
Glsi11g1157 255 Pfam Ribosomal S17 113 232 IPR001210 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1157 Glsi-ChrGlsi11 7240110 7243979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1157 113 255 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 80.420 6.93e-77 227