Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1153 ATGTCCATAAATCCCTACTACACGGACATTCCAGAGACGACGCCGTGGTGGACGACTCAGCAACATCAAGGCGTCCTAATGGAAGCATTCCAAAACCGCTCCACTTCTGAACCCCCCATAGTCAACCCTGCTTGGCCTTCCCATATCTACCACCTCCGCCAACCCTACCTCAATTCCCACACTCCCCAACACCCACCCGGTTCCTTTTTCAACCTCAATCAACACGACGAAGATGACAATGGACAACCACCCCTCCATGACCAGCCCACCAGCTCACACTCCCCAGAACACCAAGCCCAAAAGGAAGCCATGTTCGAGAAGCCATTAACACCCAGTGACGTGGGCAAGCTCAACCGCCTCGTCATCCCAAAACAGCACGCCGAAAAATACTTCCCACTCGGCGACTCCGGGGAGAGCAAGGGTCTATCACTGAGTTTCGAGGACGAGTCGGGCAAGTGCTGGCGCTTCCGTTACTCCTATTGGAACAGTAGCCAGAGCTACGTTTTGACAAAAGGATGGAGCCGTTACGTGAAGGATAAGCACCTCGATGCCGGCGACGTCGTTTTGTTCGAGCGGCACCGCACCGACGCTCACCGCCTCTTCATCAGCTGGAGGCGCCGCCATCAGAGTAGGTCCACTCCGGCGCACGTTAGCAGAGGGGCGGCGGCGGGGCTTCGCAACACTGACGGCCATAGCAATAATAACAATGGGGTGGGCGGTGTTGGTGTGGGGTGGACCAGAGGTTTCTATTCTGCGCATCCTTATCCTACGCATCACCCCTTGCCATACCAACCTGACTGCCTTCATGCAGGTAGAGCGGATGAGAACAAAAAGACGCCGGTGGGAAACACTTCCAGCTCGAGGGTACTGAGGCTGTTCGGAGTAAACATGGAATGCCAACCTGAAGAATCCGGATCCTCCAGACCCGAATGCTCCTACATGTCATCAACCCAGGCAGGGGGTCGAGCAGATGAGAAATCGCCGAGGATAAAGCGCTGTGGATGTAGAAGAAGTAAGAAACCTAAAGGAAGGAAGAGAGCAGTAGGTCCCACAGAGAGGGAGATAGCTGACGTAAGCAAGTGCCAAATGGAGAATTTAGGACAATATTGTAGATCTGGAATGAGGAATCTATATGCCACTGTTGGGATTCTGCCTGAAGATTTTTCTTAA 1170 0.5359 MSINPYYTDIPETTPWWTTQQHQGVLMEAFQNRSTSEPPIVNPAWPSHIYHLRQPYLNSHTPQHPPGSFFNLNQHDEDDNGQPPLHDQPTSSHSPEHQAQKEAMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGDSGESKGLSLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVLFERHRTDAHRLFISWRRRHQSRSTPAHVSRGAAAGLRNTDGHSNNNNGVGGVGVGWTRGFYSAHPYPTHHPLPYQPDCLHAGRADENKKTPVGNTSSSRVLRLFGVNMECQPEESGSSRPECSYMSSTQAGGRADEKSPRIKRCGCRRSKKPKGRKRAVGPTEREIADVSKCQMENLGQYCRSGMRNLYATVGILPEDFS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1153 389 MobiDBLite consensus disorder prediction 266 287 - -
Glsi11g1153 389 MobiDBLite consensus disorder prediction 300 322 - -
Glsi11g1153 389 Pfam B3 DNA binding domain 105 207 IPR003340 GO:0003677
Glsi11g1153 389 MobiDBLite consensus disorder prediction 56 101 - -
Glsi11g1153 389 MobiDBLite consensus disorder prediction 300 329 - -
Glsi11g1153 389 MobiDBLite consensus disorder prediction 56 98 - -
Glsi11g1153 389 ProSiteProfiles B3 DNA-binding domain profile. 105 208 IPR003340 GO:0003677
Glsi11g1153 389 Gene3D - 98 217 IPR015300 -
Glsi11g1153 389 SUPERFAMILY DNA-binding pseudobarrel domain 102 209 IPR015300 -
Glsi11g1153 389 SMART B3_2 105 208 IPR003340 GO:0003677
Glsi11g1153 389 FunFam B3 domain-containing protein 98 217 - -
Glsi11g1153 389 CDD B3_DNA 104 198 IPR003340 GO:0003677
Glsi11g1153 389 MobiDBLite consensus disorder prediction 212 236 - -
Glsi11g1153 389 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 71 309 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1153 Glsi-ChrGlsi11 7214954 7218331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1153 97 303 RAV Transcription Factor Family AT5G06250 51.351 2.57e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi11g1153 B3 8.3e-30 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2570 02 75546965 75548518 Glsi11g1153 11 7214954 7218331 CCT
Glsi11g1153 11 7214954 7218331 Glsi11g1153 11 7214954 7218331 ECH