Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1141 ATGGAACAGCAGACAAGTCCATCCGGGTCTTCGCAGCCATTCCTCTCTGTCTCAGTGACTGATCCTGTTAAACTCGGCAATGGCGTCCAAGCCTATATCTCCTACCGCACAAATTTTCCTGGATACCAGGGACCTGAGAAGATTGTCATTCGACGCTATAGTGACTTTGTATGGTTACGTGACCATCTTTTTGAAAAGTACAAAGGCATATTCATTCCTCCTCTTCCAGAGAAAAGTGCTGTAGAGAAATTCCGTTTGAGTGTTGAATTTATTGAGATGAGGCGTCAAGCATTGGATATATTTGTAAATAGGATAGCGTCACATCATGAACTTCAACAAAGTGAGGATCTGAACACATTTTTGCAGGCAGATGAAGAGAAAATGGAGAAATTAAGGTCTCAGGAGACTAGTATATTCAAGAAGCCAGCTGATTTAATGCAGATCTTTAAGGATGTGCAATCTAAAGTGAGTGATGCTGTCCTTGGGAAAGAGAAGCCAGTGGAAGAATCAAATACTGAATATGAAAAGCTAAAACATTACATCTTTGAGCTTGAAAACCACTTGGCTGAAGCTCAAAAACATGCTTATCATCTTGTGAAGCAGCACGGAGAGTTGGGGCAATCACTGGCTGATTTTGGAAAAGCGGTAAATCTTCTCAGTGTTTGTGAAGAAAATGCTCTTGGGAGGGCATTCTCTGAACTTGGGACAAAGTCAGAGATTTTATCAGTCAAGCTGCAAAAGGAGGCGCATCAGCTCTTGATGAATTTTGAACAACCTCTGAAAGATTATGTCCGTTCTGTGCAATCTATTAAGGCAACAATAGCAGAGAGGGCCAATGCCTTCAGGAGACAATGTGAACTGGCTGAAACAATGAAGCTGAAGGAGGTTAACCTTGACAAACTCATGCGGACTCTATCTGATGGAGTGGGAGAAGCCGAGCATGAATATAAGGAGTTGAAGGCAGAGACCGAACATGCAACAAGGACATTTGAGACGATTGTGAAATTTATGAATGAAGAGATAGTGCGTTTTCAGGAACAGAAAACATTAGATTTGGGGATTGCATTTCATGAATTTGCGAAAGGTCAGGCACGCCTAGCAAATGGAGAGGCAAATATCCCAGCGGCGATGCAGATATTCGTGAAAACACTAACAGGGAAGACCATAACTCTCGAGGTCGAGAGCAGCGACACTATCGACAATGTTAAGGCTAAGATTCAAGATAAGGAAGGTATTCCGCCGGATCAGCAGCGTTTGATATTCGCTGGCAAGCAGCTTGAAGATGGTCGAACTTTGGCTGATTACAACATTCAGAAGGAGTCGACGCTTCATCTTGTATTGAGACTTCGTGGGGGTATCATAGAGCCTTCATTGATGGCTTTGGCTCGCAAATACAATCAAGACAAGATGATCTGCCGCAAATGCTATGCTCGTCTACATCCAAGGGCTGTAAACTGCCGGAAAAAGAAGTGTGGTCATAGTAATCAGTTGAGGCCAAAGAAGAAGATCAAGTAA 1515 0.4297 MEQQTSPSGSSQPFLSVSVTDPVKLGNGVQAYISYRTNFPGYQGPEKIVIRRYSDFVWLRDHLFEKYKGIFIPPLPEKSAVEKFRLSVEFIEMRRQALDIFVNRIASHHELQQSEDLNTFLQADEEKMEKLRSQETSIFKKPADLMQIFKDVQSKVSDAVLGKEKPVEESNTEYEKLKHYIFELENHLAEAQKHAYHLVKQHGELGQSLADFGKAVNLLSVCEENALGRAFSELGTKSEILSVKLQKEAHQLLMNFEQPLKDYVRSVQSIKATIAERANAFRRQCELAETMKLKEVNLDKLMRTLSDGVGEAEHEYKELKAETEHATRTFETIVKFMNEEIVRFQEQKTLDLGIAFHEFAKGQARLANGEANIPAAMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1141 504 SMART Ribosomal_L40e_3 453 504 IPR001975 GO:0003735|GO:0005840|GO:0006412
Glsi11g1141 504 CDD Ubl_ubiquitin 377 452 - -
Glsi11g1141 504 SMART PX_2 11 124 IPR001683 GO:0035091
Glsi11g1141 504 Pfam Ubiquitin family 379 450 IPR000626 GO:0005515
Glsi11g1141 504 FunFam sorting nexin 1 isoform X2 10 135 - -
Glsi11g1141 504 Gene3D - 376 454 - -
Glsi11g1141 504 Pfam PX domain 44 123 IPR001683 GO:0035091
Glsi11g1141 504 Coils Coil 302 329 - -
Glsi11g1141 504 ProSiteProfiles Ubiquitin domain profile. 377 452 IPR000626 GO:0005515
Glsi11g1141 504 Gene3D - 455 504 IPR038587 -
Glsi11g1141 504 Pfam Ribosomal L40e family 454 503 IPR001975 GO:0003735|GO:0005840|GO:0006412
Glsi11g1141 504 SUPERFAMILY Zn-binding ribosomal proteins 452 503 IPR011332 GO:0006412
Glsi11g1141 504 CDD BAR_SNX 169 373 - -
Glsi11g1141 504 Gene3D - 4 134 IPR036871 GO:0035091
Glsi11g1141 504 FunFam Ubiquitin-60S ribosomal L40 fusion 377 454 - -
Glsi11g1141 504 ProSiteProfiles PX domain profile. 13 128 IPR001683 GO:0035091
Glsi11g1141 504 ProSitePatterns Ubiquitin domain signature. 403 428 IPR019954 -
Glsi11g1141 504 SUPERFAMILY PX domain 10 125 IPR036871 GO:0035091
Glsi11g1141 504 Pfam Vps5 C terminal like 155 352 IPR015404 -
Glsi11g1141 504 SMART ubq_7 377 448 IPR000626 GO:0005515
Glsi11g1141 504 PANTHER SORTING NEXIN 8 372 - -
Glsi11g1141 504 PRINTS Ubiquitin signature 387 407 IPR019956 -
Glsi11g1141 504 PRINTS Ubiquitin signature 429 450 IPR019956 -
Glsi11g1141 504 PRINTS Ubiquitin signature 408 428 IPR019956 -
Glsi11g1141 504 CDD PX_SNX1_2_like 15 124 - -
Glsi11g1141 504 SUPERFAMILY Ubiquitin-like 353 452 IPR029071 -
Glsi11g1141 504 Gene3D Arfaptin homology (AH) domain/BAR domain 166 375 IPR027267 -
Glsi11g1141 504 FunFam ubiquitin-60S ribosomal protein L40 455 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1141 Glsi-ChrGlsi11 7153633 7163938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1141 377 504 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 99.219 2.83e-89 267