Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1128 ATGATGGGGACGAGAGGTAGTGATGTAGCAGCCCAAAATCCTGAGTCTCCAGAGAATGATCAAGAGCAGGTAGATTTTGACGGGGACAATTATCAAGAAGATACCATGGAGGAAGAAGTTGAGTATGAAGAAGTAGAGGAGGAGGAAGAAGTGGAAGAGGAAGAGGAAGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAAGAGGAAGAGACTAAAGGGACTGAAAAAGGCTCAGATGGTGAAGAGAAAATGAAAGTTGCAGACTTTGAGGATGAAGATGAGAAAAAGAAGCATGCAGAGCTTCTTGCACTTCCACCTCATGGTTCAGAGGTTTACCTTGGCGGTATTCCTCCCAAGGCTTCTGAAGAGGATTTGAGGGCCTTTTGTCAATCTGTGGGAGATGTCTCAGAGGTTAGGATTATGAAGGGAAGAGAGTCTGGTGACGCTAGAGGTTATTCTTTTGTGACTTTCAAGACAAAGGAGATGGCATCTAATGCCATTAAGAAGCTGGACAAATCTCAATTTCAGGGAAATAAAATAAAATGCTCAACATCTCAAGCAAAGCATAGGCTGTTCATTGGTAATATTCCTAGAAATTGGACAGAGGAAGATATGAAGAAGGCTGTTGCAGAGATTGGGCCTGGAGTCAATTCTGTTGAACTGTTGAAGGATCCACAGAATTCAGCCCGTAATCGGGGATTTGCTTTTATTGAGTATTACAATCATGCATGCGCAGAATATTCAAGGCAGAAGATGTCAAACCCAAAATTTAAACTTGATAACAATGCTCCAACAGTGAGCTGGGCTGACCCTAAAAATGCTGAATCATCTGCAGCCTCCCAGGTAAAGGCAGTGTATGTAAAGAATCTTCCAGAAAACATTACACAGGATCGTCTTAAAGAGCTGTTTGAACATCATGGAAAGATCACCAAAGCGGTTCTCCCTCCTGCTAAAGCAGGACATGAGAAGAGCAGATTTGGTTTTGTTCACTTTGCTGAGAGGTCAAGTGCCATGAAAGCATTGAAGAATACGGAGAAATATGAAATTGATGGTCAAGTTTTGGAGTGTTCACTTGCAAAGCCACAAGCAGATCAGAAGTCACCTGGGACTCCAAATTCACAGAACTCGGTTCTACTGCCAACTTATCCACCACATCTTAGTTATGGTATGGTTGGAGGCGCATATGGTGCTATAGGTGCCGGATATGGTGCTGCTGGCTTTACACAACCACTTTTCTATGGTGGGGGAGCAACTCCTGCTGGCATGGCAATGATGCCGATGCGTTTACCAGATGGAAGGATTGGATATGTATTGCAACAGCCAGGGTTGCAACAGCATACCCCTTCAGCATCCAGAGGTGGCAGGAGTGGTAGTAGCTCAAGTGGAGGGAAACGCAGTAATGATAAGAACCGAGGTAGCCGATATCATCCCTACTAA 1443 0.447 MMGTRGSDVAAQNPESPENDQEQVDFDGDNYQEDTMEEEVEYEEVEEEEEVEEEEEVEEEEEEEEEEEEEEETKGTEKGSDGEEKMKVADFEDEDEKKKHAELLALPPHGSEVYLGGIPPKASEEDLRAFCQSVGDVSEVRIMKGRESGDARGYSFVTFKTKEMASNAIKKLDKSQFQGNKIKCSTSQAKHRLFIGNIPRNWTEEDMKKAVAEIGPGVNSVELLKDPQNSARNRGFAFIEYYNHACAEYSRQKMSNPKFKLDNNAPTVSWADPKNAESSAASQVKAVYVKNLPENITQDRLKELFEHHGKITKAVLPPAKAGHEKSRFGFVHFAERSSAMKALKNTEKYEIDGQVLECSLAKPQADQKSPGTPNSQNSVLLPTYPPHLSYGMVGGAYGAIGAGYGAAGFTQPLFYGGGATPAGMAMMPMRLPDGRIGYVLQQPGLQQHTPSASRGGRSGSSSSGGKRSNDKNRGSRYHPY 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1128 480 Gene3D - 30 191 IPR012677 -
Glsi11g1128 480 Coils Coil 28 77 - -
Glsi11g1128 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 285 363 IPR000504 GO:0003723
Glsi11g1128 480 SUPERFAMILY RNA-binding domain, RBD 282 372 IPR035979 GO:0003676
Glsi11g1128 480 SMART rrm1_1 112 185 IPR000504 GO:0003723
Glsi11g1128 480 SMART rrm1_1 192 269 IPR000504 GO:0003723
Glsi11g1128 480 SMART rrm1_1 286 359 IPR000504 GO:0003723
Glsi11g1128 480 MobiDBLite consensus disorder prediction 441 480 - -
Glsi11g1128 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 287 356 IPR000504 GO:0003723
Glsi11g1128 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 259 IPR000504 GO:0003723
Glsi11g1128 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 183 IPR000504 GO:0003723
Glsi11g1128 480 Gene3D - 192 272 IPR012677 -
Glsi11g1128 480 MobiDBLite consensus disorder prediction 75 97 - -
Glsi11g1128 480 CDD RRM_SF 113 185 - -
Glsi11g1128 480 MobiDBLite consensus disorder prediction 20 74 - -
Glsi11g1128 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Glsi11g1128 480 SUPERFAMILY RNA-binding domain, RBD 108 276 IPR035979 GO:0003676
Glsi11g1128 480 MobiDBLite consensus disorder prediction 1 97 - -
Glsi11g1128 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 273 IPR000504 GO:0003723
Glsi11g1128 480 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 18 472 - -
Glsi11g1128 480 Gene3D - 274 398 IPR012677 -
Glsi11g1128 480 SMART rrm2_1 286 359 IPR003954 GO:0003676
Glsi11g1128 480 SMART rrm2_1 112 185 IPR003954 GO:0003676
Glsi11g1128 480 MobiDBLite consensus disorder prediction 442 468 - -
Glsi11g1128 480 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 274 383 - -
Glsi11g1128 480 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 192 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1128 Glsi-ChrGlsi11 7091416 7094776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1128 149 456 Eukaryotic Initiation Factors Gene Family AT2G23350 26.023 3.29e-18 85.9