Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1112 ATGGAGAGCTTCGATGAAGGTTTCGAACTGAGGGAGATTCAGACACTTGAAGGTCACTCTGATAGGGTTTGGAGCTTGGCTTGGAACCCTGCTACTGGGCATTCTGGAATTCCACTTGTCTTTGCTTCTTGCAGCGGCGACAAAACCGTCCGAATCTGGGAACAGAATATCTCCTCTGGTCTTTGGGACTGCAAGGCAGTTTTGGAAGAAACACACACTAGAACAGTTCGGTCTTGTGCTTGGTCACCATCTGGGAAACTGTTGGCTACTGGAAGCTTTGATGCCACAACTGCCATATGGGAAAATGTTGGGGGCGATTTTGAGTGTGTCTCTACTCTGGAGGGTCATGAAAATGAAGTGAAGAGTGTATCTTGGAATGCTTCTGGATCTCTGCTGGCTACATGTGGTAGAGATAAATCTGTTTGGATATGGGAAGTGCAACCAGGTAATGAGTACGAGTGTGTGTCAGTGTTGCAAGGACATACACAAGATGTGAAGATGGTGCAGTGGCATCCAACAAGGGATATATTATTTTCATGTAGCTATGATAACAATATTAAGGTGTGGGCAGATGAAGGTGACAGTGATGATTGGCAGTGTGTTCAGACTTTAGGAGAACCTAATAACGGTCATACTTCTACTGTTTGGGCCCTCTCCTTCAATGCTATTGGAGACAAAATGGTTACCTGTAGCGATGATCTTACCCTGAAGGTATGGGAAGCAGACAACATAGGGATGCAATCCGGAAATGAATTCGCAACTTGGAGACATCTTTGCACTCTTACTGGGTATCATGATCGGACAATTTTCTCAGTCCATTGGTCAAGAGAAGGTATCATTGCCAGTGGAGCAGCTGATGATGGTATACGACTTTTTGTGGAGAATAATGAAAGTTCGGTTGGTGGCCCTCTGTATAAATTGCTGCTGAAGAAGGAGAAGGCCCATGACATGGATATCAATTCAGTGCAATGGAGCCCTGGGGAGAAGCGGCTGCTAGCATCTGCAAGCGATGATGGAACTATCAAGGTGTGGGAGCTGGTCTCGCGTTGCTGA 1053 0.4606 MESFDEGFELREIQTLEGHSDRVWSLAWNPATGHSGIPLVFASCSGDKTVRIWEQNISSGLWDCKAVLEETHTRTVRSCAWSPSGKLLATGSFDATTAIWENVGGDFECVSTLEGHENEVKSVSWNASGSLLATCGRDKSVWIWEVQPGNEYECVSVLQGHTQDVKMVQWHPTRDILFSCSYDNNIKVWADEGDSDDWQCVQTLGEPNNGHTSTVWALSFNAIGDKMVTCSDDLTLKVWEADNIGMQSGNEFATWRHLCTLTGYHDRTIFSVHWSREGIIASGAADDGIRLFVENNESSVGGPLYKLLLKKEKAHDMDINSVQWSPGEKRLLASASDDGTIKVWELVSRC 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1112 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 113 154 IPR001680 GO:0005515
Glsi11g1112 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 208 243 - -
Glsi11g1112 350 SMART WD40_4 106 145 IPR001680 GO:0005515
Glsi11g1112 350 SMART WD40_4 61 101 IPR001680 GO:0005515
Glsi11g1112 350 SMART WD40_4 9 54 IPR001680 GO:0005515
Glsi11g1112 350 SMART WD40_4 254 293 IPR001680 GO:0005515
Glsi11g1112 350 SMART WD40_4 151 190 IPR001680 GO:0005515
Glsi11g1112 350 SMART WD40_4 305 345 IPR001680 GO:0005515
Glsi11g1112 350 SMART WD40_4 197 240 IPR001680 GO:0005515
Glsi11g1112 350 FunFam Probable cytosolic iron-sulfur protein assembly protein CIAO1 8 349 - -
Glsi11g1112 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 158 189 IPR001680 GO:0005515
Glsi11g1112 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 54 IPR001680 GO:0005515
Glsi11g1112 350 CDD WD40 12 345 - -
Glsi11g1112 350 Pfam WD domain, G-beta repeat 313 344 IPR001680 GO:0005515
Glsi11g1112 350 Pfam WD domain, G-beta repeat 198 239 IPR001680 GO:0005515
Glsi11g1112 350 Pfam WD domain, G-beta repeat 108 144 IPR001680 GO:0005515
Glsi11g1112 350 Pfam WD domain, G-beta repeat 153 189 IPR001680 GO:0005515
Glsi11g1112 350 Pfam WD domain, G-beta repeat 12 53 IPR001680 GO:0005515
Glsi11g1112 350 Pfam WD domain, G-beta repeat 63 100 IPR001680 GO:0005515
Glsi11g1112 350 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 8 348 IPR028608 GO:0016226|GO:0097361
Glsi11g1112 350 Gene3D - 40 349 IPR015943 GO:0005515
Glsi11g1112 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 158 189 - -
Glsi11g1112 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 113 147 - -
Glsi11g1112 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 350 - -
Glsi11g1112 350 PANTHER WD40 PROTEIN CIAO1 10 348 IPR028608 GO:0016226|GO:0097361
Glsi11g1112 350 SUPERFAMILY WD40 repeat-like 9 344 IPR036322 GO:0005515
Glsi11g1112 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 208 243 IPR001680 GO:0005515
Glsi11g1112 350 ProSitePatterns Trp-Asp (WD) repeats signature. 332 346 IPR019775 -
Glsi11g1112 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 16 54 - -
Glsi11g1112 350 PRINTS G protein beta WD-40 repeat signature 88 102 IPR020472 -
Glsi11g1112 350 PRINTS G protein beta WD-40 repeat signature 332 346 IPR020472 -
Glsi11g1112 350 PRINTS G protein beta WD-40 repeat signature 41 55 IPR020472 -
Glsi11g1112 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 350 IPR001680 GO:0005515
Glsi11g1112 350 ProSitePatterns Trp-Asp (WD) repeats signature. 227 241 IPR019775 -
Glsi11g1112 350 ProSitePatterns Trp-Asp (WD) repeats signature. 132 146 IPR019775 -
Glsi11g1112 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 69 101 - -
Glsi11g1112 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 69 101 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1112 84 348 U-box Gene Family AT2G33340 27.068 1.57e-14 72.4