Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1093 ATGAAGGTGGTCGCTGCTTATTTGCTGGCCGTTTTGGGAGGGAACACCGCCCCGTCCTCCGCCGACATCAAGGACATCCTTGGCTCTGTTGGAATAGAGGCTGATGATGATAGGATTGAACTTCTTTTGTCCGAAGTAAAGGGTAAAGACATAACAGAGCTAATTGCCGCCGGTAGGGAAAAGTTGGCGTCAGTTCCTGGCGGAGGTGGTGGTGCTGTTGCAGTGGCTGCTGCTCCTGGTGGAGGTGGTGCTGCTGCTGCTCCAGCAGCAGCTGAGGCAAAGAAAGAGGAAAAGGTCGAGGAGAAAGAGGAATCCGATGATGACATGGGCTTCAGTCTCTTTGACTAA 348 0.5287 MKVVAAYLLAVLGGNTAPSSADIKDILGSVGIEADDDRIELLLSEVKGKDITELIAAGREKLASVPGGGGGAVAVAAAPGGGGAAAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1093 115 Gene3D - 1 59 IPR038716 -
Glsi11g1093 115 Pfam 60s Acidic ribosomal protein 18 114 - -
Glsi11g1093 115 FunFam 60S acidic ribosomal protein P2 1 59 - -
Glsi11g1093 115 MobiDBLite consensus disorder prediction 79 115 - -
Glsi11g1093 115 Hamap 50S ribosomal protein L12 [rpl12]. 2 115 IPR027534 GO:0003735|GO:0005840|GO:0006414
Glsi11g1093 115 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 115 IPR044076 GO:0002182|GO:0003735|GO:0022625
Glsi11g1093 115 CDD Ribosomal_P2 1 115 IPR044076 GO:0002182|GO:0003735|GO:0022625
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1093 Glsi-ChrGlsi11 6927096 6927759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1093 1 70 Cytoplasmic Ribosomal Protein Gene Family AT2G27710 78.571 5.18e-32 107