Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1092 ATGGGTTCATTCTCTGGCACTTGTGAAATAGTTGAAGCTGGAGAAGAGCTAAATACAGGGAAATCTGCAAAGATTTATCAGCCAAATTCTAGATTTAGTTTGGGCGAGAAAAATCAGAAGCTTCCAGTGTTGAAACTGGGATACAAGGACAATCTAGACAATGATATCAATAGGCTCTTTGAATCAATTACCCTTAAAACTTCATCGAGGGACATGGGTCTTTTACAAGATGGTACAAGCCCTAAGATGAAAAATGCCTTGAAAAAGCCAATTACAGTGGGTGTTCCTCGGTCTCCACGTGTTGGTACCTCTGAGCCTGCAACTCTGAAGCAGGCATTAAGAGACCTATGTATATCGAAGGCATCAGAAATGGCTGCTATGAAACGAATATCAAAGTCAACAACTTCTCCAAGAGTATCTGAGGTTGGGAAGATAAAGGCATTGTACAATTCAGTTGTAGCTGAAGCCAGTCGACCAGGGCCCTCCTTTATTGAGGGTAAACAGAGTGGAATTGAAATATCGCTAGTGTCAGAAGAGAGCAAATCAAATTCCTTGGAGAAAATATCCCGATCTCATCAAACTGCCAATATGACAACATCCAGTGCAAGTGTTAATTCTTCTCCCAAAATTGCTATTGCAACTACCAAAAATGATACTGCGACTTCATCTATGGAAAGTGATTTGGTAAGTTCATTAAGTAAAGTTGGGGTTCAGTCACAGCACATGGATCCTGGTCAAACAGGAAAACAAACATCCGCATATTCTCGATCTCTTTCTAATACGGATGGAAGCAAATCAGAGTTTCCTGAAAATGCTTCTGCCCCTAAAAAATTAGGAAATAAAGGATCTGTATCAAAGGCTGGTCGGAAAGTTAAGTTACAAACAGTATCTTCCTCATCTACATCTACTTCAGCGAATGGGAATAGAATGAGCAAGCTGTCCCACAATGCCCATACAGTCAAATCGGTCATGAAGAACAAGAATTTGAACAAGAAGAAACTTAAGCAGGATTCTGGTTCTGCTTTAGGTGCTTCCACATCCAATGAAATCAATAATAAGTCAGCTCCTGGTGCAACACAACTGGTTTGTGAGAGGTGTCGGTGTACTTTAGAGAATACAAGTAAAGAAAGGAGCCAAGATACTATAGCATCAGACTCTGCCACTCCTGGAGATGGAGTAAGCTCAAGTAGGGTGCACTATAGTGCAAATAAACCTGTTCCCACATCAACTAGCTCTAATAGAAGCAAAGCAGTCGCAAAAGTGAAAAAGAACCCCATATTGAAAGAGCAACTTGAATTTTCTCAAAGTTCAAAGAGTAGCCAGGGTGAGTACAGTACTAGTACAAGTACCAGTGATGAGAGCAATGCGAGTGGGTTTACTTGTGGCAATAGGCCTCACATGTCGAAGGATGTTAGGTGGGAAGCCATACATCAAGCTCAAATGCAGCATGGAGTCATGGGCTTGAGACAGTTCAAGCTTTTAAAGAAACTTGGTTGTGGAGACATTGGGACTGTATATCTTGCTGAATTAATTGGCACAAATTGCTTATTTGCTATCAAGGTTATGGACAATGAATTTTTGGCAAGAAGGAAGAAGATGTCTAGAGCTCAAACTGAAAGAGACATATTAAGGAAGCTGGATCATCCTTTTCTGCCCACACTCTATGCTCAATTCACATCAGATAATTTTTCGTGTCTGGTCATGGAGTATTGCCCAGGAGGAGATCTTCACGTTCTACGGCAGAAGCAGCCTGGTAGAAGTTTTTCTGAGCCAGCAGCAAGGTTTTATGTTGCTGAAGTCCTTCTCGCACTGGAGTACTTGCACATGCTTGGAGTTGTTTACCGCGATCTGAAACCTGAAAACATTCTTGTTCGAGAAGATGGGCACATTATGCTTACTGATTTTGACCTCTCACTAAGGTGTGCTGTAAGCCCAACGCTTCTGAAATCATCTTTTGATGTGGATCCAGCAAAGATATCTGGTCCTTGTGCACAATCTAGTTGCATTGAGCCATTCTGCATTGAGCCATCCTGTCAAGTTTCATGCTTCAGCCCTAGATTCTTACCCACTGCTGCTAAAGCAAGGAAATTGAAAGCTGATCTTGCTGCCCAGATCAGATCGTTGCCACAGCTTGTGGCCGAGCCTACTGATGCAAGATCAAACTCTTTTGTTGGTACCCATGAATACTTGGCACCTGAGATCATCAAAGGAGAGGGACATGGAGCTGCAGTTGATTGGTGGACTTTTGGTGTTTTTCTTTATGAACTTTTATATGGTAGAACACCCTTTAAAGGTTCTAAGAATGAGGAAACATTAGCCAATGTGGTATTGCAAAGTCTCAGATTTCCTGACAGCCCATTTATTAGTTTCCAAGCCAGGGATCTGATAAGAGGGTTGTTGATTAAAGAGCCTGAAAACCGTTTGGGTTCAGAGAAAGGAGCTGCTGAGATTAAACAGCATCCCTTCTTTGAAGGCCTTAATTGGGCATTAATTCGCTGTGCTGTCCCTCCAGAGTTTCCAGAGTTTTGTGATTTTGGAATTCCCGACATGACCTCACAGGGAAAGTATTTTGAGTGTAAGGCAACGGGAGAGCATGTGGAATTTGAGTTGTTTTGA 2616 0.4197 MGSFSGTCEIVEAGEELNTGKSAKIYQPNSRFSLGEKNQKLPVLKLGYKDNLDNDINRLFESITLKTSSRDMGLLQDGTSPKMKNALKKPITVGVPRSPRVGTSEPATLKQALRDLCISKASEMAAMKRISKSTTSPRVSEVGKIKALYNSVVAEASRPGPSFIEGKQSGIEISLVSEESKSNSLEKISRSHQTANMTTSSASVNSSPKIAIATTKNDTATSSMESDLVSSLSKVGVQSQHMDPGQTGKQTSAYSRSLSNTDGSKSEFPENASAPKKLGNKGSVSKAGRKVKLQTVSSSSTSTSANGNRMSKLSHNAHTVKSVMKNKNLNKKKLKQDSGSALGASTSNEINNKSAPGATQLVCERCRCTLENTSKERSQDTIASDSATPGDGVSSSRVHYSANKPVPTSTSSNRSKAVAKVKKNPILKEQLEFSQSSKSSQGEYSTSTSTSDESNASGFTCGNRPHMSKDVRWEAIHQAQMQHGVMGLRQFKLLKKLGCGDIGTVYLAELIGTNCLFAIKVMDNEFLARRKKMSRAQTERDILRKLDHPFLPTLYAQFTSDNFSCLVMEYCPGGDLHVLRQKQPGRSFSEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCAVSPTLLKSSFDVDPAKISGPCAQSSCIEPFCIEPSCQVSCFSPRFLPTAAKARKLKADLAAQIRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGRTPFKGSKNEETLANVVLQSLRFPDSPFISFQARDLIRGLLIKEPENRLGSEKGAAEIKQHPFFEGLNWALIRCAVPPEFPEFCDFGIPDMTSQGKYFECKATGEHVEFELF 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1092 871 Pfam Protein kinase domain 492 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1092 871 Pfam Protein kinase domain 720 823 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1092 871 FunFam Serine/threonine-protein kinase D6PK-like 489 574 - -
Glsi11g1092 871 PANTHER FLIPPASE KINASE 1-RELATED 255 842 - -
Glsi11g1092 871 MobiDBLite consensus disorder prediction 339 354 - -
Glsi11g1092 871 ProSitePatterns Serine/Threonine protein kinases active-site signature. 612 624 IPR008271 GO:0004672|GO:0006468
Glsi11g1092 871 SMART serkin_6 491 823 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1092 871 Gene3D Transferase(Phosphotransferase) domain 1 716 839 - -
Glsi11g1092 871 MobiDBLite consensus disorder prediction 374 463 - -
Glsi11g1092 871 MobiDBLite consensus disorder prediction 290 324 - -
Glsi11g1092 871 MobiDBLite consensus disorder prediction 375 418 - -
Glsi11g1092 871 Gene3D Transferase(Phosphotransferase) domain 1 571 639 - -
Glsi11g1092 871 ProSiteProfiles Protein kinase domain profile. 491 823 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g1092 871 FunFam serine/threonine-protein kinase D6PK-like 575 642 - -
Glsi11g1092 871 MobiDBLite consensus disorder prediction 429 462 - -
Glsi11g1092 871 MobiDBLite consensus disorder prediction 178 268 - -
Glsi11g1092 871 Gene3D Phosphorylase Kinase; domain 1 489 570 - -
Glsi11g1092 871 MobiDBLite consensus disorder prediction 178 354 - -
Glsi11g1092 871 CDD STKc_phototropin_like 489 841 - -
Glsi11g1092 871 FunFam serine/threonine-protein kinase D6PK-like 718 841 - -
Glsi11g1092 871 SUPERFAMILY Protein kinase-like (PK-like) 471 843 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1092 Glsi-ChrGlsi11 6914629 6918523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1092 1 871 AGC Kinase Gene Family AT2G36350 51.255 0.0 857
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Glsi11g1092 Pkinase 2.8e-37 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2902 02 78037012 78038645 Glsi11g1092 11 6914629 6918523 CCT
Glsi12g0654 12 22666254 22676017 Glsi11g1092 11 6914629 6918523 CCT
Glsi11g1092 11 6914629 6918523 Glsi12g0654 12 22666254 22676017 ECH
Glsi11g1092 11 6914629 6918523 Glsi11g1092 11 6914629 6918523 ECH