Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1087 ATGACCAAAATCCTCTCGCCGCCAATGCAATGGAACTGTGCTGTCAGTCTTCTCTGGGCTCTGCCTTTGCATTTTACATGGAAAGCTTATTTTAAGGTTCTGCTTCCCTTTCTTAACCCTATGCTTGCTTGCCGCTATTCTTTCCCCAAAGTCCCATTTCCAAAGCAAAGCAGAAAGACAGAAAGACTGCAGCAATGGAGAACCCAGCATGAGTCAGAGCAACAGCATTCTGCAAAGATGCCAAAACTTGACCTTGAACCCCAGCAAAAGCCAGAATCATCGGCCTCTGCTCTCCCTTTGTTTGTACCCGATCCCAACAGTAAAATCAGCACCCTGTCTGCAATATTATCCGATTCAACATTACCTACTCCCAGTGCTTTTAGTTCTTTGATCATTTTCTCCTTTTCCCTTTCTGGGGTTTCATTCACGTTGTGCATATTAGGGATGGGAAATTATTTCAGCATGGCTCAGTGGCAGGAGCTTGAGTTGCAGGCTTTGATATTTAGGTATATGCTGGCGGGTGCTGCAGTTCCTCCTGAGCTTCTTCAGCCAATCAGGAAAAGCCTTCTCCATTCCCCTCCCTGTTTCCTCCATCACCCACTTCAACAGTATGCCCCAGCTTTATTACAATCAGGGTACTGGGGAAGAGCAGCCATGGATCCGGAGCCCGGCCGGTGTCGGAGGACCGACGGGAAGAAGTGGCGGTGCTCAAAGGAGGTGGTGGTGGGGCTGAAGTACTGCGAGCGCCACATGAATCGCGGTCGAAACCGTTCAAGAAAGCCTGTGGAACTTCCCACAACAACCGCTGCTGGTGGCGGTGGGCCTCTCGCTGCTACAACCTCCATTTCTGCGCCGCCACTGGCCACGCACTCATTGGATTCGCCATTCGATCTCCTCCATCTTAATCAGAGTTCCTCGGGGATCAAAAATGAGAACAAGGGCTTGTTTGGAATCCAAGATAATATTGGTGGGGATGGCAGATCTGGTGGTCATATCCTGCGGCATTTCTTCGATGATTTTCCACGATCGCTTCGAGAACCTGACGATGCTGAAAGTAATGCTAGTTCGAACAATTCGGCAACATGCCTCTCTATTTCAATACCTGGAAATACTTCGTCGGATGTGTCACTGAAATTGTCCACTGGCAATGGAGAAAATCCGTGTCCAAGAAATGGTATTGTTAGCACAGAGCAATCGCTGTTAAATTTGCCAGGAGGATGGAGTTCGGCTATTCAAGTGGCTTCAATGGGAGGACCACTTGCGGAGGTGCTGAGATCATCCACCACCTCAACTTTTTCACCAAGGAGTGTTCTACGCCAGTGA 1323 0.4906 MTKILSPPMQWNCAVSLLWALPLHFTWKAYFKVLLPFLNPMLACRYSFPKVPFPKQSRKTERLQQWRTQHESEQQHSAKMPKLDLEPQQKPESSASALPLFVPDPNSKISTLSAILSDSTLPTPSAFSSLIIFSFSLSGVSFTLCILGMGNYFSMAQWQELELQALIFRYMLAGAAVPPELLQPIRKSLLHSPPCFLHHPLQQYAPALLQSGYWGRAAMDPEPGRCRRTDGKKWRCSKEVVVGLKYCERHMNRGRNRSRKPVELPTTTAAGGGGPLAATTSISAPPLATHSLDSPFDLLHLNQSSSGIKNENKGLFGIQDNIGGDGRSGGHILRHFFDDFPRSLREPDDAESNASSNNSATCLSISIPGNTSSDVSLKLSTGNGENPCPRNGIVSTEQSLLNLPGGWSSAIQVASMGGPLAEVLRSSTTSTFSPRSVLRQ 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1087 440 ProSiteProfiles WRC domain profile. 220 264 IPR014977 -
Glsi11g1087 440 SMART QLQ_2 151 187 IPR014978 GO:0005524|GO:0005634|GO:0006355
Glsi11g1087 440 Pfam WRC 221 263 IPR014977 -
Glsi11g1087 440 PANTHER GROWTH-REGULATING FACTOR 5 89 373 IPR031137 GO:0005634|GO:0006351|GO:0032502
Glsi11g1087 440 Pfam QLQ 153 186 IPR014978 GO:0005524|GO:0005634|GO:0006355
Glsi11g1087 440 ProSiteProfiles QLQ domain profile. 152 187 IPR014978 GO:0005524|GO:0005634|GO:0006355
Glsi11g1087 440 MobiDBLite consensus disorder prediction 59 88 - -
Glsi11g1087 440 MobiDBLite consensus disorder prediction 344 365 - -
Glsi11g1087 440 MobiDBLite consensus disorder prediction 59 86 - -
Glsi11g1087 440 MobiDBLite consensus disorder prediction 350 365 - -
Glsi11g1087 440 MobiDBLite consensus disorder prediction 257 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1087 Glsi-ChrGlsi11 6860952 6863660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1087 62 440 GRF Transcription Factor Family AT3G52910 47.631 4.77e-80 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Glsi11g1087 WRC 7.9e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2648 02 76116613 76118115 Glsi11g1087 11 6860952 6863660 CCT
Glsi11g1087 11 6860952 6863660 Glsi11g1087 11 6860952 6863660 ECH