Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1082 ATGCAGAGTTGCACTATACTTTGATATCCAACACCAAGCTGGCTTACACCCCGACTCTTCAACACCGCAGTTCAGCAACAACTGGTTTGCACTTTCCATCTCGCAACCTCCTTCTCCCGCCATCAGATTTCCCCCATAAATGGCGTCCCTCAACCGCCAACTGCCATCAAGGTTCAATCAAACAATACCATGCGTTCCAATACTCACTCTACTTGTAGCAGTAGCAAGCCCTCTGCTGCAGCAACTGGGCGTCACCCAGCTTACCGCGGAGTCAGGCGTCGGAGCAGTGGGAAATGGGTGTCTGAAATTCGGGAGCCCAAGAAGCCTAACAGGATTTGGTTAGGCACATTCCCTACACCAGAAATGGCTGCTGTAGCCTATGATGTGGCTGCGCTTGCTCTTAAGGGTAAGGATGCTGAGCTCAACTTCCCTAACTCAGCTTCTTCATTGCCTGTGCCTGCCTCTTCCTCTGCCAGTGACATTCAGGTGGCCGCAGCTAGCGCTGCCGCTGCTGTTGGGGCAGCCAAGGATGCATTAACTGGGACTGAGGGAACCCAATCTGGGAATGTTTCAGTGTCTCAGGAGATGGCAGGAGTAACCGAGTTTGTGGATGAGGACTTGATCTTTGACATGCCCAATGTCCTGGCCAATATGGCAGAAGGAATGCTGCTCAGCCCTCCTCCTTTGGACATGGCTTGGGAGGCTGCTGCCCCAGAAAACATGGGTGATCAAGATTCAAACCTTTGGAATTTCCCTTATTTCCCATAA 768 0.5182 MQSCTILXYPTPSWLTPRLFNTAVQQQLVCTFHLATSFSRHQISPINGVPQPPTAIKVQSNNTMRSNTHSTCSSSKPSAAATGRHPAYRGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAVAYDVAALALKGKDAELNFPNSASSLPVPASSSASDIQVAAASAAAAVGAAKDALTGTEGTQSGNVSVSQEMAGVTEFVDEDLIFDMPNVLANMAEGMLLSPPPLDMAWEAAAPENMGDQDSNLWNFPYFP 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1082 255 SUPERFAMILY DNA-binding domain 87 146 IPR016177 GO:0003677
Glsi11g1082 255 MobiDBLite consensus disorder prediction 64 86 - -
Glsi11g1082 255 ProSiteProfiles AP2/ERF domain profile. 87 144 IPR001471 GO:0003700|GO:0006355
Glsi11g1082 255 CDD AP2 88 146 IPR001471 GO:0003700|GO:0006355
Glsi11g1082 255 PRINTS Ethylene responsive element binding protein signature 126 146 IPR001471 GO:0003700|GO:0006355
Glsi11g1082 255 PRINTS Ethylene responsive element binding protein signature 88 99 IPR001471 GO:0003700|GO:0006355
Glsi11g1082 255 SMART rav1_2 87 150 IPR001471 GO:0003700|GO:0006355
Glsi11g1082 255 MobiDBLite consensus disorder prediction 64 80 - -
Glsi11g1082 255 FunFam Ethylene-responsive transcription factor 2 86 145 - -
Glsi11g1082 255 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 63 250 IPR045277 GO:0003700
Glsi11g1082 255 Gene3D AP2/ERF domain 87 145 IPR036955 GO:0003700|GO:0006355
Glsi11g1082 255 Pfam AP2 domain 86 136 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1082 Glsi-ChrGlsi11 6824715 6825853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1082 83 252 AP2-EREBP Transcription Factor Family AT2G36450 63.483 7.77e-56 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi11g1082 AP2 8.5e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2654 02 76147247 76150699 Glsi11g1082 11 6824715 6825853 CCT
Glsi11g1082 11 6824715 6825853 Glsi11g1082 11 6824715 6825853 ECH