Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1079 ATGGACATGGAGAACTCACGCAGATCGTTGGATAGATCGAGAGAACCAGGCATAAAGAAACCCCGATTGACCAACGAGCTTGAGCGCGGCCCAAATCCAACTGTTCGACCATTTCCTCAGCGACAAGTGGCTACGGGGGTTAATACGTTAGCTTCGGCAAGGTTTAGAACAAGCGACAGAGATTCGGGAAGCGGTGATTCAGGTCGTCCCCAGCAACTGCTGCATCAGGAGCTTGTAACTCAGTATAAGACAGCGCTTGCCGAGCTGACTTTCAATTCAAAACCGATAATTACCAACTTGACCATAATTGCTGGCGAGAATCTCTATGCCGCGAAGGCAATTGCTGCGACTGTTTGCTCTAATATTCTAGAGGTTCCTAGTGAACAAAAGCTGCCGTCGCTTTATCTTTTAGACAGTATAGTTAAGAATATCGGGCGGGATTATATAAAATACTTTGCTGCCAGACTACCTGAGGTATTCTGCAAGGCATACAGACAGGTTGGTCCATCTGTCCATACAAGCATGCGTCATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCTTCAGACCCTTCAGATGATTGAGAAAGAACTTGGCTTTACTCCTGCAGTCAATGGTTCATCTTCCGCATCTACTACACACAGGAGTGATTCACAGTCACAACGCCCGCCCCATAGTATCCATGTGAATCCCAAGTATTTAGAAAGGCAACGTCTTGAACAGTCTAGTGGGACTAAGGGATTAGTTAATGATATGACTGGAGCTATTGCAAAGTCAACTGAGGACAAAGAGAAGCCACATAGAGCTTTGGTTGCTGCACGACCTTTGCTGGATCCCAGACTTAACGCACATAACATTACGCCTGCTCATAGAGATGCATTTAATGATTCTGTTCCTGAAAAGAGCATTAGTTCATCATATGGGGGCAGTGAACATGGTTCAGATCTGTCAAGTAAATTGGGCTTGGGCATTGGAAGAACTGGTAGTAGGGTCACTGATTTAGGACATGACAAAGCTTGGTACAAAGCAGGTAGCAATGTTGCGGAGGTTAAGTCTGGGCAAAAAAATGGTTTAAGTCTCAAGCATGGTCTTTCAAGTCATGAAGCACCAAAGTCCTTGAATGTGGATGCGCATCACCAGCTAACACAAAGCTTAACTAGCATAAGAAGTAGTGTGATGTCAAATAGCTGGAAAAATTCTGAGGAAGAGGAGTTCATGTGGGATGATATGGACTCTCGATTGACTGAATATGGTGCATCCAGAGTCTCTAATAACTTGAGCAAAGATCATTGGACTGCTGATGATGAAAATTTGGAAGTTGAAGATCACCTCCAAACCACAGAGTGTTTTGGGGCAAATGTTGGTAGAGAAATAACCACTGAATCCCTATCCTCTGGAAAGAAACAACTACCTGCTTTTGGGCATCGTCCATCATTATCATGGCAATTGCAGGAGCAGCACTCAATTGATGAGCTGAATTATAAGCCAGGTCATTCAGAAGGTTTTGTATCCACTCTTGGTGGGTTACCTACCAGTACAAACTCTTCTGCTGTCAGGGTAGGGAATCGGCCTTTCTTGCCAAATGCACCTGCAGGAATGGTGGGACAGCAAAACTTTCACACTGTCCAAGCTGAATCTCCTTTTGGGCAGTCACCTTTGCAGCAACAGTCTCCATCACTACCAGAAACAGTGCGCCATCCTCATCACTTGCGAAATTGGGCTGAGCAAGACCATCAGCAGACTCTTAAAGCATCTCATTTTTCAGGGGATCTGCAGGGACAATATAGTCAAGATTCTTCACCTGCCCTTCCTCCTAATGGTCAGGCTGGCAACTTGCGAAAGTCACAGCAAATGGATTTGCAAGGTCCCGTATCTTCAGTGACTTCTTTTCAGCCTAGTCATCGTACTGCAGTTTCACAGCAGCAGCTGGGCTCTTATACTGAAGTTTCTGATAAGAATGAGAAGCTACCCCAGTCAAAAGTTTCTCTAGCCAGTGAAACTTCTGATCAGTCAACCCCAAGTAGTTTGTTAGCTGCAGTCATGAAGAGTGGAATCTTCAACAGTTCAATCACAAGTAATCTTCCCACTACGAGTTTCCTGGATATAAGTAATCTGCCATCACAATTAGGGGTTAAGCCTACCCAGCCAGGTGGGCCTCCGGGAAAGGTTGCATCACTATCTTCATTAGGTCCTCCAAATGATGACTCCTCTTCTATGCCAAAATTATCTCAAGGAAAGGTTGGACAACCACCAAGGGCATGTGCTCTACCTCCAGCTTCCTCTACTGTGAATGGTGCCTCCGCTCAGATCTCTAATTCCACTAATACATCAAGTCCAATTTCAAACCTTTTAAGTTCATTAGTTGCAAAGGGTTTGATTTCTGCAGAGTCATCAAATAAGGTGCCAACTGATAGTCAATTGGAAGATCAAAGCCACAGCAATACCACCAGTAGCTCTTCGCCAGTTGCTTCGGTTTCTGGTTCTCCGGCCATCCCTGTATCATCTATTGGAGATGAGGTAGATCATGATACAAACAGTTCTGTTTCCTTATCTCAATCAACCACCACAGAAATAAGAAACCTTATTGGCTTTGAGTTTAAGCCTGATGTAATCCGACAATTACATCCATCTGTGATCAGAGAACTACTGGATGATCTTCCACATCATTGCAGCATTTGTGGCCTTAGGCTTAAACATCAAGAACAGTTTAATGGACACTTGGAGTGGCATGTTATAAGAGAAAGAGAACAAAATGGTCTAATTAAGGCATCAAGAAGATGGTATGCAACGTCTAGTGACTGGATTGGTAGCAAGGTTGAATGTCCATCTGAATATGAATATACTAATTCTGCAGATGTGGATCAAGAGAAAGGAGACAAGAGTGAGCTGGATGCAATGGTTCCAGCAGATGAAAATCAGTGCTTGTGTCTGTTTTGTGGTGAGCTATTTGAAGATGTTTACTGTCAAGAAAGAGATGAGTGGATGTTCAAGGGGGCTGCTTTCCTGACCGGATCAGATAGTGATGGAGAGATGGGTATTGGAAATGTCAGTACTACTATGGGTCCCATTATTCATTCAAAATGCTTATCAGAGGCCTCCATATACAGTATCGCCAAGATGGAACAGGATTAA 3132 0.4403 MDMENSRRSLDRSREPGIKKPRLTNELERGPNPTVRPFPQRQVATGVNTLASARFRTSDRDSGSGDSGRPQQLLHQELVTQYKTALAELTFNSKPIITNLTIIAGENLYAAKAIAATVCSNILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVGPSVHTSMRHLFGTWKGVFPLQTLQMIEKELGFTPAVNGSSSASTTHRSDSQSQRPPHSIHVNPKYLERQRLEQSSGTKGLVNDMTGAIAKSTEDKEKPHRALVAARPLLDPRLNAHNITPAHRDAFNDSVPEKSISSSYGGSEHGSDLSSKLGLGIGRTGSRVTDLGHDKAWYKAGSNVAEVKSGQKNGLSLKHGLSSHEAPKSLNVDAHHQLTQSLTSIRSSVMSNSWKNSEEEEFMWDDMDSRLTEYGASRVSNNLSKDHWTADDENLEVEDHLQTTECFGANVGREITTESLSSGKKQLPAFGHRPSLSWQLQEQHSIDELNYKPGHSEGFVSTLGGLPTSTNSSAVRVGNRPFLPNAPAGMVGQQNFHTVQAESPFGQSPLQQQSPSLPETVRHPHHLRNWAEQDHQQTLKASHFSGDLQGQYSQDSSPALPPNGQAGNLRKSQQMDLQGPVSSVTSFQPSHRTAVSQQQLGSYTEVSDKNEKLPQSKVSLASETSDQSTPSSLLAAVMKSGIFNSSITSNLPTTSFLDISNLPSQLGVKPTQPGGPPGKVASLSSLGPPNDDSSSMPKLSQGKVGQPPRACALPPASSTVNGASAQISNSTNTSSPISNLLSSLVAKGLISAESSNKVPTDSQLEDQSHSNTTSSSSPVASVSGSPAIPVSSIGDEVDHDTNSSVSLSQSTTTEIRNLIGFEFKPDVIRQLHPSVIRELLDDLPHHCSICGLRLKHQEQFNGHLEWHVIREREQNGLIKASRRWYATSSDWIGSKVECPSEYEYTNSADVDQEKGDKSELDAMVPADENQCLCLFCGELFEDVYCQERDEWMFKGAAFLTGSDSDGEMGIGNVSTTMGPIIHSKCLSEASIYSIAKMEQD 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1079 1043 MobiDBLite consensus disorder prediction 204 251 - -
Glsi11g1079 1043 MobiDBLite consensus disorder prediction 760 778 - -
Glsi11g1079 1043 MobiDBLite consensus disorder prediction 38 72 - -
Glsi11g1079 1043 ProSiteProfiles CID domain profile. 74 202 IPR006569 -
Glsi11g1079 1043 MobiDBLite consensus disorder prediction 799 831 - -
Glsi11g1079 1043 FunFam polyadenylation and cleavage factor homolog 4 71 199 - -
Glsi11g1079 1043 MobiDBLite consensus disorder prediction 288 318 - -
Glsi11g1079 1043 MobiDBLite consensus disorder prediction 710 778 - -
Glsi11g1079 1043 SMART 558neu5 77 199 IPR006569 -
Glsi11g1079 1043 MobiDBLite consensus disorder prediction 298 313 - -
Glsi11g1079 1043 ProSitePatterns Zinc finger C2H2 type domain signature. 890 910 IPR013087 -
Glsi11g1079 1043 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 33 1033 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Glsi11g1079 1043 SUPERFAMILY ENTH/VHS domain 76 203 IPR008942 -
Glsi11g1079 1043 MobiDBLite consensus disorder prediction 1 26 - -
Glsi11g1079 1043 Pfam CID domain 83 192 IPR006569 -
Glsi11g1079 1043 MobiDBLite consensus disorder prediction 799 852 - -
Glsi11g1079 1043 MobiDBLite consensus disorder prediction 590 673 - -
Glsi11g1079 1043 CDD CID_Pcf11 79 191 IPR047415 -
Glsi11g1079 1043 Gene3D - 70 199 IPR008942 -
Glsi11g1079 1043 MobiDBLite consensus disorder prediction 729 744 - -
Glsi11g1079 1043 MobiDBLite consensus disorder prediction 204 226 - -
Glsi11g1079 1043 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1079 Glsi-ChrGlsi11 6794546 6801885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1079 77 414 C2H2 Transcription Factor Family AT4G04885 40.793 2.05e-57 211