Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1077 ATGAACCCAAAAGACGAAGGTTACTCAAAATCTTTAACGATTGGGTTCTCTCCCATTGAGTTGGGTTCTGAACCATTCGCGTCGGTCTCTCTATTCGAAGATACATCAGCTAGTCTTGCTATGAGGGATATTGGCCTTTCTGGGCCTCTTCCCTTGTCTTCGTTTGATTCTCCTACACCGGACTTCGAATCATTTTCTGTTATGTACCCGACGTCTCTGTCTGCTTCTTCTTCCCCTGTTATTGCAATGTCTGTAGGTGAGACAGCTCCTTTGTTACCATCATCTGCCGGGGAGGAGACCGGATTAATGGGAACAAGCCGTGAATTTGAGAGCGCTGGTGTGCCACAGCCGCTTGAGTGTTTACAAGGGAACTCAGTTCCGCCATTTCTATCTAAAACCTTCGATCTTGTGGAAGAACCATCGCTGGATCCGATCATATCATGGCGCTCGACCGGTGGGAGTTTCGTTGTATGGGACCCCGTGGATTTTGCAAGACTTGTCTTGCCACGGATTTTCAAGCATAACAATTTTTCCAGTTTTGTCCGCCAGCTAAATACTTATGTGGTACTGGCAACAGAAGGAATATTTCCCCTCGAGCGTCTACTGTCTCGGGGATTTCATCTTCCGCAGATTGCTTACCCCGATACAATTCTATCTGCTCATAATGGCTTAGGTTTTGTTTTGAATGTGACCAAACAATCTCTTTGTTTTCCTTTGCTTATTAATTATACTCCTCCCCCCTTTCTCCTTGCCTTTGGACCTCTTCACCCTTCATTCTCAAGTCTCTTGGGCATGTGTATCCAGGGGTTTCGCAAGATTGACACTGATAAGTGGGAGTTTGCTAATGAAGCTTTTCAGCGAGGGAAAAGACATTTACTGAAGAACATCCAAAGGCGCAAGTCACCTCAATCTCAGCAGGTTTGTAGCTACATTGGGCCTTCTATTGAAACAGGGAAGCCTGGACTTGAAATTGAGATAGAAAGATTGAGAAAGGAGAGGAGTGTGTTAATGCAAGAGGTGGTTGACTTGCAGCAACAGCAGCGAAGGACGGTTCATCATGCGGGAGAAGTGAACCAGAGGCTCCAGTCTGCAGAGCAGAGGCAGAAACAAACGGTCTCTTTCTTGGCGAAGTTATTTCAAAATCCAGCCTTTTTAGCTCGTCTTAAGCAAAACAAGGAACAGAGAGATGTGGGTTCTCCAAGACACCGACATGAAACAGGAACATCAGAGTCAGATTCATTGAAGGAAGGGCAGTTTGTGAGATTCCGACCCAATTGGAGAAATATGACCATCCACCCTTCTGAAACACTGGAACTCAATCCAGTTTTTACTGAACATTCTTCTGACTACCTTTCACGTGGTTTGGGAAGTGAAGTGAATGCAAGCGCCCAGAATCCGACCTCAAAAATTCAGAATGTTGTATCAGATGAATTGACTGCAGTGGATGAGACCATGGCAACTCCAGAGATCATAGGAGAAGGATCATCAAGCTTAGGACTTGAAGATCCCCTTTTCAAAGGGAAAATTTTAATGAGCCCAGATCAAGAAATTATTCCAGAGTATTTTGTCCCAGCGCCTGAGCACTTGACCCAGGGCTTTCCAGAGTTTCCCCCTCTTGAAACTGAAAGCATTATTGAACAAGAAGATATATGGAACCCATGTGTTAATGTAAGCCGTGCTGCTTCTGGCTCTGGGAATGAACTGTGGGGCAATCTAGTCAATTATGAAGGGACAGGTAGTGCGTTAGACATGTTGGATATAAGCTCTCTGGAAGCTACAGGAAGTTTGGGTATTGATGAGTGGCCAACTGATGAAATCCTTGTTAATGAAACAGAAAGCGAAGCTGGTCAGCCACAAGATGACAGATCTGAGAATGTCAAGCCATAG 1887 0.451 MNPKDEGYSKSLTIGFSPIELGSEPFASVSLFEDTSASLAMRDIGLSGPLPLSSFDSPTPDFESFSVMYPTSLSASSSPVIAMSVGETAPLLPSSAGEETGLMGTSREFESAGVPQPLECLQGNSVPPFLSKTFDLVEEPSLDPIISWRSTGGSFVVWDPVDFARLVLPRIFKHNNFSSFVRQLNTYVVLATEGIFPLERLLSRGFHLPQIAYPDTILSAHNGLGFVLNVTKQSLCFPLLINYTPPPFLLAFGPLHPSFSSLLGMCIQGFRKIDTDKWEFANEAFQRGKRHLLKNIQRRKSPQSQQVCSYIGPSIETGKPGLEIEIERLRKERSVLMQEVVDLQQQQRRTVHHAGEVNQRLQSAEQRQKQTVSFLAKLFQNPAFLARLKQNKEQRDVGSPRHRHETGTSESDSLKEGQFVRFRPNWRNMTIHPSETLELNPVFTEHSSDYLSRGLGSEVNASAQNPTSKIQNVVSDELTAVDETMATPEIIGEGSSSLGLEDPLFKGKILMSPDQEIIPEYFVPAPEHLTQGFPEFPPLETESIIEQEDIWNPCVNVSRAASGSGNELWGNLVNYEGTGSALDMLDISSLEATGSLGIDEWPTDEILVNETESEAGQPQDDRSENVKP 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1077 628 MobiDBLite consensus disorder prediction 389 415 - -
Glsi11g1077 628 SMART hsfneu3 125 299 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi11g1077 628 FunFam Heat stress transcription factor B-4 121 193 - -
Glsi11g1077 628 Coils Coil 319 346 - -
Glsi11g1077 628 Gene3D - 121 300 IPR036388 -
Glsi11g1077 628 PRINTS Heat shock factor (HSF) domain signature 180 192 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi11g1077 628 PRINTS Heat shock factor (HSF) domain signature 129 152 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi11g1077 628 PRINTS Heat shock factor (HSF) domain signature 167 179 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi11g1077 628 SUPERFAMILY "Winged helix" DNA-binding domain 124 188 IPR036390 -
Glsi11g1077 628 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 115 427 IPR027725 -
Glsi11g1077 628 Pfam HSF-type DNA-binding 129 299 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi11g1077 628 MobiDBLite consensus disorder prediction 389 411 - -
Glsi11g1077 628 MobiDBLite consensus disorder prediction 600 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1077 Glsi-ChrGlsi11 6780645 6788052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1077 256 626 HSF AT5G03720 34.309 1.09e-45 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi11g1077 HSF_DNA-bind 6.6e-26 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g1077 11 6780645 6788052 Glsi11g1077 11 6780645 6788052 ECH