Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1068 ATGGAAGAGAAAGAGATCAATATTTTTGGGTCACCGGGGAACTCGGAGTCCGGCTCGCCCCCACAAGCCGTCGGTAGCTCCCTGCCGCAGGTGACCAACATGGCGGTAAACATGAACTTGGAAAATACTGGAGGGGCCACAGTTGCAGATGCAGCAGCCACAGCAACAATGACATCACCGGGAAGTACTGGAGGAGGAGGAGGGCAAGGGAGCTTTGATTTGTTTGGGAAAAAGAAGAGAGGGAGGCCAAGAAAATATGATTCAGATGGGAAGTTGAGTTTGGCGTACCAGGGTGCACCATCATCACAACCACGCTTTTCTTTGTCGCCTAGTTCAGCTTCCGACTTCTCCTCCAAAAGGGGTCGAGGCAGACCTCCTGGCTCTGGTAACTGGCAGCTCCTTGCATCTTTAGGTGAGTTGTTTGCGAACACAGCTGGTGGGGATTTTACACCTCATGTGGTGACGGTTCATACTGGAGAGGATGTTGCCGGGAAAATCTTGTCATTCGCCCAGAAAGGTCCAAGAGGAATTTGCATTCTTTCTGCCAACGGAGCTATATCTAATGTCACTATACGACAACCTGGTTCTTCTGGTGGCTTATTGACTTACGAGGGTCGATTTGAGATTTTATCATTGTCTGGGTCATTCACAGTATCTGATAATGGTGGCATAAGAAGTCGAACCGGCGGGTTGAGTGTCTCACTGGCTGGCCCTGATGGTCGTGTGATAGGAGGCGGTGTTGCTGGTTTATTGACAGCTGCTAGCCCAATCCAAATTGTGATGGGAAGCTTCATGCCGTATGCTATCACAACAAAGCCAGAGAGAATCTGA 831 0.4994 MEEKEINIFGSPGNSESGSPPQAVGSSLPQVTNMAVNMNLENTGGATVADAAATATMTSPGSTGGGGGQGSFDLFGKKKRGRPRKYDSDGKLSLAYQGAPSSQPRFSLSPSSASDFSSKRGRGRPPGSGNWQLLASLGELFANTAGGDFTPHVVTVHTGEDVAGKILSFAQKGPRGICILSANGAISNVTIRQPGSSGGLLTYEGRFEILSLSGSFTVSDNGGIRSRTGGLSVSLAGPDGRVIGGGVAGLLTAASPIQIVMGSFMPYAITTKPERI 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1068 276 ProSiteProfiles PPC domain profile profile. 146 276 IPR005175 -
Glsi11g1068 276 SMART AT_hook_2 77 89 IPR017956 GO:0003677
Glsi11g1068 276 SMART AT_hook_2 119 131 IPR017956 GO:0003677
Glsi11g1068 276 CDD DUF296 150 264 IPR005175 -
Glsi11g1068 276 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 264 IPR005175 -
Glsi11g1068 276 Gene3D - 151 275 - -
Glsi11g1068 276 SUPERFAMILY AF0104/ALDC/Ptd012-like 148 272 - -
Glsi11g1068 276 MobiDBLite consensus disorder prediction 75 89 - -
Glsi11g1068 276 MobiDBLite consensus disorder prediction 10 30 - -
Glsi11g1068 276 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 48 268 IPR039605 GO:0003680
Glsi11g1068 276 MobiDBLite consensus disorder prediction 95 118 - -
Glsi11g1068 276 MobiDBLite consensus disorder prediction 1 30 - -
Glsi11g1068 276 PRINTS AT-hook-like domain signature 77 87 IPR017956 GO:0003677
Glsi11g1068 276 PRINTS AT-hook-like domain signature 117 128 IPR017956 GO:0003677
Glsi11g1068 276 MobiDBLite consensus disorder prediction 56 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1068 Glsi-ChrGlsi11 6704878 6707695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1068 77 265 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 60.101 1.55e-71 222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g1068 11 6704878 6707695 Glsi11g1068 11 6704878 6707695 ECH