Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1059 ATGGATTGGAACGGGAGCAGTAGACCCTTTGTTCCTCGAGCAGAGTCTTCCTTAAGCTTCTGCTACAACTACAACTACCCATATCCAGGAATGGAAGTGAAACATCCAGCATTGGCTGAGACGCCACAAGGTTTGCTGTCGGCAATGGCAATGGAGAAAATGAAATACGGAAACCAGGAGAAGAAGAAACGGTTAACAAGCGATCAGCTCGAGTCGCTGGAGAAGAGTTTTCAGGAGGAGATAAAGTTAGACCCGGATAGAAAGATGAAGCTTTCGAGGGATCTAGGGCTGCAGCCTCGCCAAATTGCTGTTTGGTTCCAAAATAGGCGTGCTAGGTGGAAGGCTAAGCAGCTTGAGCACTTGTATGATTCGCTTAAACAGGAATTTGATGCTATCTCTAAGGAAAAACAGAAGCTTCAAGAAGAGGTAGTGAAGTTGAAGGGTATGCTGAGAGAGCAAGGTTCGAGGACGGAGGCATGTGGAGGATATACAGAAATATCAGGGGAAGAAACAGTAGAAAGCAGGTCAGAAGCCCTGCGTAAGCAGCCACGGGGAACAAGCCATCACCAGGTTGCAGAGGGCAACTGTTGTTTCACAGTGGACGATTATAACACACTTTCACTGCCCTACTATGCTGTTGTCCCTTATTATCCCTGA 657 0.4718 MDWNGSSRPFVPRAESSLSFCYNYNYPYPGMEVKHPALAETPQGLLSAMAMEKMKYGNQEKKKRLTSDQLESLEKSFQEEIKLDPDRKMKLSRDLGLQPRQIAVWFQNRRARWKAKQLEHLYDSLKQEFDAISKEKQKLQEEVVKLKGMLREQGSRTEACGGYTEISGEETVESRSEALRKQPRGTSHHQVAEGNCCFTVDDYNTLSLPYYAVVPYYP 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1059 218 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981|GO:0006355
Glsi11g1059 218 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677
Glsi11g1059 218 SUPERFAMILY Homeodomain-like 51 118 IPR009057 -
Glsi11g1059 218 Coils Coil 108 156 - -
Glsi11g1059 218 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 52 173 IPR045224 GO:0003700
Glsi11g1059 218 Pfam Homeobox associated leucine zipper 116 150 IPR003106 GO:0006355|GO:0043565
Glsi11g1059 218 Pfam Homeodomain 61 114 IPR001356 GO:0003677
Glsi11g1059 218 CDD homeodomain 61 117 IPR001356 GO:0003677
Glsi11g1059 218 FunFam Putative homeobox-leucine zipper protein ATHB-51 58 121 - -
Glsi11g1059 218 Gene3D - 58 120 - -
Glsi11g1059 218 SMART HOX_1 59 120 IPR001356 GO:0003677
Glsi11g1059 218 PRINTS Lambda-repressor HTH signature 96 112 IPR000047 GO:0003677
Glsi11g1059 218 PRINTS Lambda-repressor HTH signature 87 96 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1059 Glsi-ChrGlsi11 6638253 6639574 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1059 57 155 Homeobox Transcription Factor Family AT2G36610 66.355 1.57e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi11g1059 Homeodomain 3.5e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g1059 11 6638253 6639574 Glsi11g1059 11 6638253 6639574 ECH