Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1058 ATGGTGTTGATATCAGTGTTCGAGGCTTCTAAGAAAGAGAGAACGCGGAAGAAGGGTTTCCGCAAGAGGGATCGAGCAGCTACAGGAGCAGCGGCCGCGATGGTTCTCAAGACTGAACTTTGCCGTTTTAGTGGGGCCAAGATCTATCCTGGGAAAGGCATCAGATTTATTCGTGCTGATTCTCAGGTCTTCTTATTTGCCAACTCAAAATGCAAAAGGTACTTCCACAACAGATTGAAGCCATCAAAGCTCACATGGACTGCCATGTATAGGAAGCAACACAAGAAGGACATTGCCCAAGAAGCTGTGAAGAAGAGGCGCCGCGCTACCAAAAAGCCTTACTCTAGGTCTATTGTTGGTGCAACTTTGGAAGTTATCCAGAAGAAAAGAACTGAGAAACCAGAGGTTCGAGACGCTGCTAGGGAAGCTGCTCTTCGTGAAATTAAAGAGAGAATAAAAAAAACAAAGGATGAGAAGAAGGCAAAGAAGGCAGAAGTAATGGCCAAGTCACAAAAAGGACTAGGCAAAGGCAACGTTTCCAAGGGGGCAGGATCTAAAGGTCCTAAACTTGGTGGTGGCGGCGGGAAGCGCTGA 594 0.4697 MVLISVFEASKKERTRKKGFRKRDRAATGAAAAMVLKTELCRFSGAKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVMAKSQKGLGKGNVSKGAGSKGPKLGGGGGKR 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1058 197 PANTHER 60S RIBOSOMAL PROTEIN L24 37 189 IPR000988 -
Glsi11g1058 197 FunFam 60S ribosomal protein L24 36 97 - -
Glsi11g1058 197 CDD Ribosomal_L24e_L24 36 89 IPR000988 -
Glsi11g1058 197 ProSitePatterns Ribosomal protein L24e signature. 43 60 IPR023442 -
Glsi11g1058 197 MobiDBLite consensus disorder prediction 151 169 - -
Glsi11g1058 197 Gene3D Ribosomal protein L24e 36 97 IPR038630 -
Glsi11g1058 197 Pfam Ribosomal protein L24e 37 100 IPR000988 -
Glsi11g1058 197 Gene3D - 102 171 - -
Glsi11g1058 197 SMART 4TRASH 41 79 IPR011017 -
Glsi11g1058 197 MobiDBLite consensus disorder prediction 151 197 - -
Glsi11g1058 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 39 91 - -
Glsi11g1058 197 Coils Coil 145 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1058 Glsi-ChrGlsi11 6632074 6635890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1058 34 190 Cytoplasmic Ribosomal Protein Gene Family AT2G36620 84.076 1.38e-85 248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2688 02 76384365 76390729 Glsi11g1058 11 6632074 6635890 CCT
Glsi11g1058 11 6632074 6635890 Glsi11g1058 11 6632074 6635890 ECH