LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi11g1057	ATGGGAGACAAGCACGAAGAGGATCGGACTGAGAGCAGCGATTTCACGTCAGAGGACGAAGGCACCGAGGACTACCGACGGGGAGGCTACCACGCTGTGCGAATCGGTGACACCTTCAATAATGCTCGCTATGTTGTTCAGAGCAAGCTCGGTTGGGGGCATTTCTCCACAGTCTGGCTCGCTTGGGACACCCAAATTCATAGATACGTGGCCCTGAAAGTTCAAAAGAGCGCCCAGCATTACACTGAGGCAGCCATGGATGAGATAACCATTTTGCAACAGATTGCAGAGGGAGACCCCGATGATAAAAAATGTGTGGTGAAGCTTTTGGATCATTTTAAGCACTCGGGTCCAAATGGACAACATGTCTGTATGGTATTTGAATACCTTGGGGATAATCTTTTAACGCTTATTAAGTATTCTGATTACCGTGGATTGCCTATCAACATGGTTAAAGAGATTTGCTTTCACGTTTTGGTTGGACTGGATTACTTACATAAGCAGCTCTCTATCATACACACTGACTTGAAACCCGAGAACATCCTCTTGTTGTCAATGATAGATCCATCTAAGGATCCTCAGAAGTCTGGTGCTCCCTTAATTCTTCCAAGTGCTAAAGATAAAACAGTACTGGAGACAGGAATTGGGAAAGACATGAAAACTTCTAATGGGGATTTGATTAGGAATCATAAGAAAAAGATTAAAAGAAAAGCTAAGCAAGCAGCTCAGGGATGCGTGGAGAAGGAAGCTTCTGAGGAAGTAGAGGGGGATCCTGAAACCTCTGGCGCTGTAGAATCCTCTTCAAATGCAATATTGAATTCAGGTTCTGTAAGAGAACAAGCTTCTAGTTCTGCAGGGACCAATAGGTTATCAGATGCTGATGGAACAAAAGTAACCTGGTCAAAAACCCAGGGTAACAAAAGAGGAAGCCGCTCAACAAGGCAGAAGCTGCTGGCATCAGTTGACCTCAAGTGCAAATTAGTTGACTTTGGCAATGCTTGCTGGACGTATAAACAGTTTACAAATGATATTCAGACAAGACAATACCGGTGTCCAGAGGTGATCCTTGGATCCAAGTATTCTACTTCAGCAGATCTTTGGTCCTTTGCTTGCATTTGTTTTGAGCTGGCAACTGGAGATGTACTATTTGATCCTCATAGTGGTGACAACTTTGATAGGGATGAGGATCACTTAGCATTAATGATGGAGCTTCTGGGAATGATGCCACGTAAGATTGCACTTGGGGGCCGTTATTCGCGTGATTTCTTTAATAGATATGGTGATCTGAGGCACATTCGCCGGTTGCGTTTTTGGCCATTGAGCAAAGTCCTCATGGAGAAATATGATTTCAGTGAGCGAGATGCAAATGACATGAATAATTTTCTGGTTCCCATACTTGACTTTGTTCCTGAGAAACGGCCAACTGCTGGGCAGTGCCTTCTTCATCCATGGATCAATGCAGGCCCATGCCTCTTGGAGCCATCTGTGCCTCCTTCTAACCACAACCCAGCTATGGAAAGTGCCATTTCTGACCAGAAGAAAAAGGAGAAGGATGAGAGGGAGGCCATGGAGGCCGGGATGGGAAATATCGCTATCAATTCAGATTCTAAACCACACGCAGAGTTATCCGTGAAAGGCTTCCAAGGCTGTCATAAGTAG	1659	0.4497	MGDKHEEDRTESSDFTSEDEGTEDYRRGGYHAVRIGDTFNNARYVVQSKLGWGHFSTVWLAWDTQIHRYVALKVQKSAQHYTEAAMDEITILQQIAEGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEYLGDNLLTLIKYSDYRGLPINMVKEICFHVLVGLDYLHKQLSIIHTDLKPENILLLSMIDPSKDPQKSGAPLILPSAKDKTVLETGIGKDMKTSNGDLIRNHKKKIKRKAKQAAQGCVEKEASEEVEGDPETSGAVESSSNAILNSGSVREQASSSAGTNRLSDADGTKVTWSKTQGNKRGSRSTRQKLLASVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLSKVLMEKYDFSERDANDMNNFLVPILDFVPEKRPTAGQCLLHPWINAGPCLLEPSVPPSNHNPAMESAISDQKKKEKDEREAMEAGMGNIAINSDSKPHAELSVKGFQGCHK	552

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi11g1057	552	FunFam	Serine/threonine-protein kinase SRPK-like protein	315	485	-	-
	Glsi11g1057	552	MobiDBLite	consensus disorder prediction	508	524	-	-
	Glsi11g1057	552	Gene3D	Transferase(Phosphotransferase) domain 1	127	486	-	-
	Glsi11g1057	552	ProSiteProfiles	Protein kinase domain profile.	44	485	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi11g1057	552	FunFam	CMGC/SRPK protein kinase	30	129	-	-
	Glsi11g1057	552	ProSitePatterns	Protein kinases ATP-binding region signature.	50	73	IPR017441	GO:0005524
	Glsi11g1057	552	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	171	183	IPR008271	GO:0004672\|GO:0006468
	Glsi11g1057	552	MobiDBLite	consensus disorder prediction	496	552	-	-
	Glsi11g1057	552	PANTHER	PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED	10	517	-	-
	Glsi11g1057	552	Pfam	Protein kinase domain	44	183	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi11g1057	552	Pfam	Protein kinase domain	318	485	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi11g1057	552	CDD	STKc_SRPK	33	485	-	-
	Glsi11g1057	552	SMART	serkin_6	44	485	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi11g1057	552	MobiDBLite	consensus disorder prediction	238	313	-	-
	Glsi11g1057	552	MobiDBLite	consensus disorder prediction	261	313	-	-
	Glsi11g1057	552	SUPERFAMILY	Protein kinase-like (PK-like)	39	501	IPR011009	-
	Glsi11g1057	552	MobiDBLite	consensus disorder prediction	1	24	-	-
	Glsi11g1057	552	Gene3D	Phosphorylase Kinase; domain 1	20	126	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi11g1057	Glsi-ChrGlsi11	6626654	6631859	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi11g1057	10	537	EF-hand Containing Proteins	AT5G22840	70.056	0.0	747

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_SRPK	Glsi11g1057		Pkinase	4.7e-19	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi11g1057	11	6626654	6631859	Glsi11g1057	11	6626654	6631859	ECH