LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi11g1043	ATGACTATTGAACCAAACAAAAGACTACACTTCCATTTTAGCTATTTCTTTCTTCTTTTACTGCTTGTTCATCACACTACCTCTCAAAAGACTTGCCCAAACTGTGGCTCTATACAAGTTCCATACCCTTTAAGCACAGACCACAGCTGTGGCGATCCAGACTATAGTCTTCACTGTGATTCCCAATCTAAAAAACTTTACTTTGTTGCCCTCAATGGAAGTTCTTATCCCATTCTCAGAATCATGTCTTCAATCCAGCGCCTGGTGGTGCAGCCATCGCCCTGGCTTCCTGGGTCATGCGTTACTCAAGATATGCGTCTAAGCGAGGGCCTTTGGTTAAACCAGTCACTCCCTTTCAACATAACTTCATCCAACACAGTCTTCCTCTTTAACTGCTCCCCTCGTCTCTTAGTTTCTCCTCTCAATTGCACTTCTTCTAGTCTCTGTCACCGTTACTTGGAGAGCTCAGAACATGTTGACAGAAAACGAGCACTTGAGTGTGCTAGTGGCCTTGACCCTTGTTGCACCTTTACTGCAGGTGGCACGCCTTCAGCATACAAGATAAGGCTTCACAGTTCTGGTTGTAAGGCTTTTAGAAGTATCCTTCATTTGGATGTAGAGAAGCCTGCTAATCAGTGGGACGAAGGCCTTGAAATTCAATGGGCTCCTCCTCCCGAACCAATCTGCAGGAGGCAAGAAGATTGCTCTGGACCCTCTAAATGTTCCCCTGCTAGTAGAAATGGCTTTTCTCGCTGCCTTTGCAATGGTGGACACCATTGGGACCCTATTGTTGCGACTTGCTTGAAGAATAAGAAAAAATCTAAATCGCAAATCAGCTTGATGGTCTCAGCAGTAGTTTTTACTTGTTTATTTCTAGCTCTATCTCTGGCCATCATCAAAAGGAGGTCCCGGAAACCCTCTTACCGGTCAAAGGAGGCCAAGGCAATAGAAGATGCGTTAAGATCAAGCACTGGCGAGAAGCCTGGTAAGATGTTTCAATTGAAAGAAGTGATGAAAGCAACAAATGGTTTTTCTATAGACAGGATTTTGGGGAACGGTGGCTTTGGGGAAGTTTACAGAGGTGAACTTCAAGATGGTGCAATGGTGGCTGTCAAGAAAGCTAGAGTGGGTAACCTCAAAAGCACCCAACAAATACTTAACGAGGTTGCAATTCTTTCTCAAGTCAATCACAAGAACCTAGTCAGACTCTTGGGCTGTTGTGTGGAATCTGAGCTGCCTTTGATGATCTATGAGTACATCTCAAACGGGACCCTCCACGACCATCTTCATGGCCGGTATCCCAACTTCCTAGACTGGAAAACGAGGCTGAAGATTGCTTTTCAAACGGCTGAAGCATTAGCTTATCTTCATTCTTCTGCGCACACTCCCATTTACCATAGAGATATTAAGTCCACAAACATACTACTGGATGATGAATTTAACGCCAAAGTTTCAGATTTTGGGCTCTCCAGATTGGCAAACCCGGGACTTAGTCATGTTTCAACCTGTGCTCAGGGAACGTTAGGCTACTTGGATCCCGAATATTACCGCAACTACCAGTTAACTGATAAAAGTGATGTTTATAGTTATGGGGTAGTTTTGCTAGAGCTTCTGAGTTCCCAGAAGGCCATAGATTTCTCTCGCGAGCAAGATGATGTCAACCTCGCAGTTTATGTGAGTCAACATGCCAGGAATGGTACAATCATGGAAGTGGTAGATCGGAGGCTCCTTTCTGTGGAGCAATCTGGTGATAAAGTGATGACAAGCATAGAACTATTCTCAGACCTTGCACTCAACTGTCTGAGGGAGAAGAAAAATGAAAGACCTAGTATGAAGGACATTGCTCAACAGCTTCTATACATAATTAGGATTGTAGAATGA	1881	0.4418	MTIEPNKRLHFHFSYFFLLLLLVHHTTSQKTCPNCGSIQVPYPLSTDHSCGDPDYSLHCDSQSKKLYFVALNGSSYPILRIMSSIQRLVVQPSPWLPGSCVTQDMRLSEGLWLNQSLPFNITSSNTVFLFNCSPRLLVSPLNCTSSSLCHRYLESSEHVDRKRALECASGLDPCCTFTAGGTPSAYKIRLHSSGCKAFRSILHLDVEKPANQWDEGLEIQWAPPPEPICRRQEDCSGPSKCSPASRNGFSRCLCNGGHHWDPIVATCLKNKKKSKSQISLMVSAVVFTCLFLALSLAIIKRRSRKPSYRSKEAKAIEDALRSSTGEKPGKMFQLKEVMKATNGFSIDRILGNGGFGEVYRGELQDGAMVAVKKARVGNLKSTQQILNEVAILSQVNHKNLVRLLGCCVESELPLMIYEYISNGTLHDHLHGRYPNFLDWKTRLKIAFQTAEALAYLHSSAHTPIYHRDIKSTNILLDDEFNAKVSDFGLSRLANPGLSHVSTCAQGTLGYLDPEYYRNYQLTDKSDVYSYGVVLLELLSSQKAIDFSREQDDVNLAVYVSQHARNGTIMEVVDRRLLSVEQSGDKVMTSIELFSDLALNCLREKKNERPSMKDIAQQLLYIIRIVE	626

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi11g1043	626	ProSitePatterns	Protein kinases ATP-binding region signature.	350	373	IPR017441	GO:0005524
	Glsi11g1043	626	FunFam	Wall-associated receptor kinase-like 20	420	626	-	-
	Glsi11g1043	626	Pfam	Protein tyrosine and serine/threonine kinase	346	618	IPR001245	GO:0004672\|GO:0006468
	Glsi11g1043	626	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	464	476	IPR008271	GO:0004672\|GO:0006468
	Glsi11g1043	626	Gene3D	Transferase(Phosphotransferase) domain 1	420	624	-	-
	Glsi11g1043	626	ProSiteProfiles	Protein kinase domain profile.	344	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi11g1043	626	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	13	619	IPR044652	GO:0004672
	Glsi11g1043	626	Pfam	Wall-associated receptor kinase galacturonan-binding	32	89	IPR025287	GO:0030247
	Glsi11g1043	626	CDD	STKc_IRAK	350	618	-	-
	Glsi11g1043	626	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	318	419	-	-
	Glsi11g1043	626	SMART	serkin_6	344	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi11g1043	626	Gene3D	Phosphorylase Kinase; domain 1	305	419	-	-
	Glsi11g1043	626	SUPERFAMILY	Protein kinase-like (PK-like)	325	619	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi11g1043	Glsi-ChrGlsi11	6567494	6569374	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi11g1043	32	625	Receptor kinase-like Gene Family	AT5G02070	47.673	0.0	543

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK_LRK10L-1	Glsi11g1043		PK_Tyr_Ser-Thr	3.7e-49	CL0016