Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1040 ATGGCGGTTTCTCCGACCGTCTCCGCCACACCGGCGTCGCTTTACGTCGGCGATCTCCACCCTGACGTCACCGATGGTCAGCTGTTCGATGCATTCTCTGAGTTCAAGAGCCTCGCGTCTGTTAGGATCTGTAGGGACTCCTCTACGGCCAGGTCACTCTGTTACGGCTATGTCAACTTCATTTCTCCCCAAGATGCAATTCGTGCTATTGAGGTGAAGAATCATTCTACCCTGCATGGAAAAGTGATAAGGGTCATGTGGTCACATCGTGATCCAGAGGCAAGGAAAAGTGGCATAGGGAACGTGTTTGTTAAGAATTTAGCTGAACCAATAGATAATGTGGGATTACAAGATTTGTTTCAAAAATTTGGGAATATTTTGTCCTGCAAAGTTGTCATGTCTGAGGATGGGAAGAGCAAAGGGTATGGCTTTGTTCAATTTGAGTCAGAGGAATCTGCAAATGCTGCCATAGAAAAGCTGAATGGCTCCACTGTTAGAGATAAACAGATATTTGTTGCGAAGTTTGTCAAAAGAAGTGACCGCATTTTGCCTGGTCCTGATGCCAAATATACAAATTTATTCGTGAAGAATTTGGACCCAGAGACCACAGAAGAGCTTCTGCGGGAAAAGTTCTGCCCTTTTGGCAAAATTGTTAGCTTGGCTATTGCTAAGGATGACAATGGACTATCAAAGGGTTTTGGCTTTGTGAACTTTGATAATCCAGATGATGCTAGACGGGCATTGGAAGCAATGAATGGGTCACAACTTGGTTCAAAGATTCTATATGTAGCCAGGGCACAAAAGAAGGCTGAGCGTGAGCAGATCTTGCATCATCAGTTTGAGGAGAAACGTAGAGAACAAATTTTGAAATACAAGGGATCAAACATTTATGTGAAGAACATTGATGATGATGTCAGTGACGATGAACTGCGAGATTACTTTAGTGCATGTGGCACAATAGTATCTGCAAAAATTATGCGGAATGACAGAGGGATAAGCAAGGGGTTTGGTTTTGTCTGCTTCTCCACCCCTGAGGAGGGCAATAAAGCTGTGAATGCTTTTCATGGATGTATGTTTCATCGTAAACCGCTGTATGTTGCTATTGCTCAGAGGAAGGAGGATAGGCAAGCACAACTGCAGGTCCAGTATGCACAGCGACTAACAGGACTAGCTGGACCTTCAACTGCTGTTATACCTGGTGGATATCCTCCTTACTACTATGCAGCTACTGGTGTTGTTTCACAGGTGCCTTCTCGACCTGGACTAGTGTATCAACCTCTGGGATTGAGGCCAGGATGGAGGGCCAATGGCTTTGCACCTCCTACTAGACCATTTCAACAGTCACCACCAGTTCCTGTTGCTGCTACTTCTACGAGGCAGCATAGACAAAACAGGGGCAGGATGAATGGGCATGCAATTTCACAGGGAAATGTTCACTCGGGTACATATATGGCCCAAGCACAACAATCTTCTCAGTCAGCGGCCTCTTCAAAAGAATCAACGACTCAGCAGCGGACTGGGCAGACTAAGTATGTGCCCAGTGGGCGCCAACGTGAGATGGACAAAGGATCTGGAGTCTCCTCGGGTGTTTCTAATTCTCCTGTAGGGTCCCAAGGATCAGAGATGCTGCATAGCATGCTTGCTGCTGCTACTCCTGAGCAGCAGAAACAAATACTTGGCGAGCATCTTTACCCACTTGTCCAGAAACTCAAGCCTGCTCTAGCTGCGAAGATTACAGGGATGCTTTTGGAGATGGACAATGGAGAATTGCTGCTTCTCCTGGAATCTCCTGAGTCTCTTTCTGCGAAGGTGGAAGAAGCTGTGCAAGTGCTTAAGAACTCTAAGACCAAAGTGTCAGGGCAGGATGCACTTCATCCAAATTACCTTTCAGCTGAGCCCCTTGGGGACTCCATAATCTTAGAAGAAGCTGTGCGTCTAATATTGCAGAAAGATAGTCAGTCTCTCATCCTCCGTTCACCGACATAA 1986 0.4622 MAVSPTVSATPASLYVGDLHPDVTDGQLFDAFSEFKSLASVRICRDSSTARSLCYGYVNFISPQDAIRAIEVKNHSTLHGKVIRVMWSHRDPEARKSGIGNVFVKNLAEPIDNVGLQDLFQKFGNILSCKVVMSEDGKSKGYGFVQFESEESANAAIEKLNGSTVRDKQIFVAKFVKRSDRILPGPDAKYTNLFVKNLDPETTEELLREKFCPFGKIVSLAIAKDDNGLSKGFGFVNFDNPDDARRALEAMNGSQLGSKILYVARAQKKAEREQILHHQFEEKRREQILKYKGSNIYVKNIDDDVSDDELRDYFSACGTIVSAKIMRNDRGISKGFGFVCFSTPEEGNKAVNAFHGCMFHRKPLYVAIAQRKEDRQAQLQVQYAQRLTGLAGPSTAVIPGGYPPYYYAATGVVSQVPSRPGLVYQPLGLRPGWRANGFAPPTRPFQQSPPVPVAATSTRQHRQNRGRMNGHAISQGNVHSGTYMAQAQQSSQSAASSKESTTQQRTGQTKYVPSGRQREMDKGSGVSSGVSNSPVGSQGSEMLHSMLAAATPEQQKQILGEHLYPLVQKLKPALAAKITGMLLEMDNGELLLLLESPESLSAKVEEAVQVLKNSKTKVSGQDALHPNYLSAEPLGDSIILEEAVRLILQKDSQSLILRSPT 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1040 661 CDD RRM3_I_PABPs 190 269 - -
Glsi11g1040 661 Gene3D - 100 180 IPR012677 -
Glsi11g1040 661 FunFam Polyadenylate-binding protein 182 276 - -
Glsi11g1040 661 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Glsi11g1040 661 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Glsi11g1040 661 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 260 IPR000504 GO:0003723
Glsi11g1040 661 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Glsi11g1040 661 Coils Coil 263 283 - -
Glsi11g1040 661 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 12 612 IPR006515 GO:0003723
Glsi11g1040 661 SUPERFAMILY RNA-binding domain, RBD 7 98 IPR035979 GO:0003676
Glsi11g1040 661 CDD RRM4_I_PABPs 293 371 - -
Glsi11g1040 661 SUPERFAMILY RNA-binding domain, RBD 291 384 IPR035979 GO:0003676
Glsi11g1040 661 SUPERFAMILY RNA-binding domain, RBD 101 272 IPR035979 GO:0003676
Glsi11g1040 661 Gene3D - 537 627 - -
Glsi11g1040 661 CDD RRM2_I_PABPs 98 174 IPR045305 -
Glsi11g1040 661 MobiDBLite consensus disorder prediction 436 538 - -
Glsi11g1040 661 Gene3D - 2 98 IPR012677 -
Glsi11g1040 661 Gene3D - 181 276 IPR012677 -
Glsi11g1040 661 FunFam Polyadenylate-binding protein 97 181 - -
Glsi11g1040 661 Gene3D - 277 383 IPR012677 -
Glsi11g1040 661 MobiDBLite consensus disorder prediction 524 538 - -
Glsi11g1040 661 MobiDBLite consensus disorder prediction 449 513 - -
Glsi11g1040 661 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Glsi11g1040 661 PANTHER RNA BINDING PROTEIN 12 80 - -
Glsi11g1040 661 FunFam Polyadenylate-binding protein 277 385 - -
Glsi11g1040 661 Pfam Poly-adenylate binding protein, unique domain 546 611 IPR002004 GO:0003723
Glsi11g1040 661 SMART rrm1_1 13 86 IPR000504 GO:0003723
Glsi11g1040 661 SMART rrm1_1 101 173 IPR000504 GO:0003723
Glsi11g1040 661 SMART rrm1_1 192 264 IPR000504 GO:0003723
Glsi11g1040 661 SMART rrm1_1 295 367 IPR000504 GO:0003723
Glsi11g1040 661 SUPERFAMILY PABC (PABP) domain 505 622 IPR036053 GO:0003723
Glsi11g1040 661 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 539 616 IPR002004 GO:0003723
Glsi11g1040 661 FunFam Polyadenylate-binding protein 4 96 - -
Glsi11g1040 661 SMART rrm2_1 192 264 IPR003954 GO:0003676
Glsi11g1040 661 SMART rrm2_1 295 367 IPR003954 GO:0003676
Glsi11g1040 661 SMART rrm2_1 101 173 IPR003954 GO:0003676
Glsi11g1040 661 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Glsi11g1040 661 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Glsi11g1040 661 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Glsi11g1040 661 FunFam Polyadenylate-binding protein 537 623 - -
Glsi11g1040 661 SMART poly_2 551 614 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1040 Glsi-ChrGlsi11 6551251 6558592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1040 12 638 Eukaryotic Initiation Factors Gene Family AT2G36660 53.175 0.0 634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g2695 02 76442485 76447382 Glsi11g1040 11 6551251 6558592 CCT
Glsi11g1040 11 6551251 6558592 Glsi11g1040 11 6551251 6558592 ECH