Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1038 ATGAAGTGGATGGGAGCAAAAGAGAAAATACAAGGCAAAACGCTTGACTTTAAAGATATACACTGGATTCCACCAAAAAATAAACAAGCCAAATTTAATGTAGAAGGATCAGTCATGCAATTGAAGGCAACAACATACGGAGTCCACTTCTCACCATCTTGGACTTACGCACACTCTGCTATGGCGGAATCAGCCTCGGGTGAGTCCTCCAACACCACTCTGCCTCCGGAAAGCAAGCCACCGACCACCGAGCGTAAAAGTTGGGCCGATGAAACAGATGAAGATACTCCAGAGCAAACCAATGCGGCGTCGAGCTCAACATTAGTCTCGTCGCTTAACGTTGACGGATTAGCCATCGACGAGAATAAGAAGGCTACTAAGTTTTTGGATGAACCCGAAGACTCCAGCATCCAAGCGGTTACATCTGGTGATACTCCATATACCTCAGCGAGCACATTTGAAAATTTAAATCTCTCTCCGGAGTTGCTAAAAGGATTGTATGTTGAGATGAAATTCCAGAAGCCAAGCAAAATTCAAGCTATCAGTCTGCCAATGATTTTGAACCCTCCTTTTAAGGATTTGATCGCACAGGCACATAACGGTTCAGGCAAGACAACATGTTTTGTGCTTGGGATGCTGAGTCGTGTTGATCCTAAGCTGCAGGCTCCTCAAGCTCTTTGCATTTGTCCAACAAGAGAACTGGCTATTCAGAATACGGAAGTTCTTCAAAAGATGGGGAAATATACCGGGATTAGATCAGAATGTGCCATACCAGCAGACAGCAGAGACTCTATTCCAATATCAAAACGGCCACCTATAATGGCGCAAGTAGTGATTGGAACTCCTGGTACAATTAAGAAGTGGATGTCATTTAAGAAACTGAGTGTAAACAGATTAAAAATTCTTGTCTTTGATGAGGCTGATCAAATGCTTGCTGAGGATGGTTTTAAAGATGATTCCTTGAGGATAATGAAAGATATAGAAAAAGTTAATTCTAACTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGACAGTGTCAAGAATTTCGTTTCAAGGACTGTTAAGAAGGATCATAATCAACTTTTTGTGAAGAAAGAAGAACTATCTTTAGAGGCAGTGAAGCAATACAAGGTGAATTGTCCTGATGAACTTTCTAAGATCCAAGTGATCAAAGATTATATATTTGAAATAGGAGAGAATGTGGGGCAAACTATTATATTTGTACGCACAAGAAATAGTGCAAGGATGTTGCATAAAGCACTTGTTGATATGGGCTATGAGGTTACTTCCATTCAAGGTGCTCTTGAGCATGAAGAAAGAGACAAGATTGTCAAGGAGTTCAGAGATGGTTTGACTCAAGTTCTTATATCAACTGATGTTCTTGCCCGAGGTTTTGATCAGCAACAGGTTAATTTGGTTATCAATTATGATCTTCCGGTGAAACATACTGCTGAGTATACCCGTGAACCTGAGCCTGATTATGAGGTATATTTGCACAGGGTTGGTAGGGCTGGACGTTTTGGGCGCAAGGGTGCTGTATTTAACCTGATATGTGGTGAAAGGGATGAAAAACTCATGGCGAAGATTGAAAAGCACTTTGACACCCAAGCAACTGAGGTCCGAGAAAAAAGTGTTGAAGATTATAAAGGCGCTCTTAAGGAGGCTGGTTTACTGCAATGA 1683 0.4135 MKWMGAKEKIQGKTLDFKDIHWIPPKNKQAKFNVEGSVMQLKATTYGVHFSPSWTYAHSAMAESASGESSNTTLPPESKPPTTERKSWADETDEDTPEQTNAASSSTLVSSLNVDGLAIDENKKATKFLDEPEDSSIQAVTSGDTPYTSASTFENLNLSPELLKGLYVEMKFQKPSKIQAISLPMILNPPFKDLIAQAHNGSGKTTCFVLGMLSRVDPKLQAPQALCICPTRELAIQNTEVLQKMGKYTGIRSECAIPADSRDSIPISKRPPIMAQVVIGTPGTIKKWMSFKKLSVNRLKILVFDEADQMLAEDGFKDDSLRIMKDIEKVNSNCQVLLFSATFNDSVKNFVSRTVKKDHNQLFVKKEELSLEAVKQYKVNCPDELSKIQVIKDYIFEIGENVGQTIIFVRTRNSARMLHKALVDMGYEVTSIQGALEHEERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLICGERDEKLMAKIEKHFDTQATEVREKSVEDYKGALKEAGLLQ 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1038 560 SMART ultradead3 171 377 IPR014001 -
Glsi11g1038 560 Gene3D - 130 367 IPR027417 -
Glsi11g1038 560 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 106 530 - -
Glsi11g1038 560 Pfam DEAD/DEAH box helicase 177 349 IPR011545 GO:0003676|GO:0005524
Glsi11g1038 560 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 185 361 IPR014001 -
Glsi11g1038 560 MobiDBLite consensus disorder prediction 125 144 - -
Glsi11g1038 560 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 390 550 IPR001650 -
Glsi11g1038 560 MobiDBLite consensus disorder prediction 65 108 - -
Glsi11g1038 560 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 151 180 IPR014014 GO:0003724
Glsi11g1038 560 SMART helicmild6 416 509 IPR001650 -
Glsi11g1038 560 MobiDBLite consensus disorder prediction 65 80 - -
Glsi11g1038 560 CDD DEADc_DDX19_DDX25 158 357 - -
Glsi11g1038 560 Pfam Helicase conserved C-terminal domain 387 509 IPR001650 -
Glsi11g1038 560 CDD SF2_C_DEAD 374 518 - -
Glsi11g1038 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 528 IPR027417 -
Glsi11g1038 560 Gene3D - 368 556 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1038 Glsi-ChrGlsi11 6522671 6528177 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1038 144 541 Eukaryotic Initiation Factors Gene Family AT1G72730 36.098 1.85e-71 233