Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1028 ATGCTAATCCTCTCCAATTTCAGCTCCAATGGACTCCATCTGTTATCCGCGCTGATTCGCGCAGTGGTCAAAGAGGCCATGAAGCAAGACTTGGAATCGACAGCCGTTTTGAAGGGTCAATCTCATGATCAATGCGATGCTTTTGTTCCAACTCTGGCTTCAGAAACTCTGTCTGAGTCCCACATGATGATTAATCTGCAGGTTACTGAGAATAGCAGCTCTAAGATACTTAGAGGTTCTGTAGTGAATGGTTATATTGTTTATACTCGAGAAAAGAAGTCTAGGCATTTGTGTGATGGGTCTTCTGAGAACGGGAAGGTTAAGAGAGTTAGAACCTCTGAACGGCGAGCAAATGAACACCTTCCAGTGGTGGATGGTGGAGGCCGTGTAGAGGTAGATAATGTAGAAAATAAAATTGAAATTGGATTCCATTGCAATATGGAAAAACATAAAAGCTGTAACGACCTAGAAGGCGAGCCCGCACAGCATCTTGCTGGGGAAGGTGGCTTGAATGAGGTTCCTGTAGTGATTACTAACAATGTTGATGTACAGACAGATGTTGTAGATAAGGCATTGAAGCGGTATACTAGATCAGTATTGCAACCAAAGGTTGAATCTTTTGATAAGGCGGGGACTATGTCGGAAGCTTCTCAGACTGAAAATACTAAATCAGATGGGAAGGTGAACGCTGCTGCAAGCGCATTGACAACTCCAAGAAACAAGTTGGAATTGAAGATGTCGAAAAAGATTGTGCTTAACAAGAAGCCTATGACCGTCAAAGAGCTCTTCGATACTGGTTTACTGGATGGGGTTTCAGTAGTTTACATGGGCGGCAAGAAGGCTTCGGGACTGCGAGGCATTATTAAAGATGGGGGAATATTGTGCTCATGCTGTCTGTGCAATGGACGCAGAGTTATTCCACCTTCTCAATTCGAGATTCATGCATGCAAAACGTATAGGCGAGCAGCACAGTACATTTGCCTGGAAAATGGGAAGAGCCTACTTGAGCTGTTGAGAGCATGCAGGGGAGGCCCCCTACATACATTGGAGGCGACAATTCAAAACATTGTTTGTTCTCCACCTGAAGAAAAATATTTTACTTGTAAAAAGTGCAAGGCATGTTTCCCCACTTCTTGTGTGGTAAGAGTAGGGTCTATATGCAATTCGTGCGTGGAATCCAAGGAATCTGAAGACAGTTCTATTGTTGTAGTTGGCAAAAGAGTCAGGTCCCCTAGACCAGTATCTGTCTCCAAGCAATCCAGAACATCTGAGCTGTGTATATCTTCACAGATTAAGAGACACTGGAAGAAAAGATCAAAGTCTTCAAAATGGCTTAGCAGCTCAGTGTCTTCCAAGAGTTCTTCAGTTCCTATCCTATCAAGAAAGAAGAGTTTGTGGAGGATGAAAAAGAAGTTTGTACTTCCGCTGTCATCAAAATTGTTGGCAAAATTGAAGACTCCAAGAACTACTTCAAATTCAAAGTGTTTATCTTCACAAAATAAGAGTCATTGGAGGATCACTAAAAAGGATCAGCGGTTGCATAAGTTAGTTTTTGAGGAAGGTGGATTGCCTGATGGAACTGAAGTAGCTTATTACGCACGTGGACAGAAACTGCTTGAGGGTTACAAAAAGGGCTTTGGAATATTTTGTCGATGCTGCAACTCTGAGGTCAGCCCCTCACAGTTTGAGGTCCATGCAGGCTGGGCTTCCCGCAAGAAACCTTATGCGTACATCTACACATCAAATGGGGTGTCTCTCCATGAGTTAGCTATATCTCTCTCAAAGGGTCGCAAATACTCTGCAAAAGATAATGATGATCTATGCATTATTTGTTGGGATGGTGGAGATCTGTTGCTTTGTGATGGATGTCCAAGGGCATTTCATAAAGAATGCGTATCTCTGTCAAGTATTCCATGTGGTGATTGGTACTGTAAGTTTTGCCAAAACATGTTCCAAAGAGAAAGGTCTGTAGCACACAATGCCAATGCTGTGGCAGCTGGAAGGGTTGAAGGAGTTGATCCTATTGAACAAATAACCAAGAGATGCATACGCATTGTCAAAGATATTGAGGCTGAGCTTAGTGGATGTGCTTTATGCAGGGGTTATGACTTTAGCAGATCAGGATTTGGTCCACGAACAATAATACTCTGTGATCAGTGTGAAAAGGAATATCATGTTGGCTGTTTGAGGGATCATAAAATGTCATATTTGAAGGAATTGCCAAAAGGGGATTGGTTTTGTTGCCTGGATTGCTCAACAATACATTCTAGTTTGCAGAACCTCTTGATTAGGGGGGCTGAGAACCTCCCTGAACCTCTCTTGGATCTTATAAAGAAGAAGCAAGAGAAAAAAGGTTTAGAATCCCTCAATGATATTGATGTGAGATGGAGGCTTCTTAATGGCAAAATTGCTTCTCCTGAAACTAGGCCATTGCTTTCAAAGGCTGTCTCAATCTTTCATGAATGCTTTGATCCTATAGTTGATCCAATTAGTGGACGCAACCTTATTCCGGCCATGGTTTATGGAAGGAACGTGCGGGGGCAAGAGTTCGGAGGAATGCATTGTGCAATATTAATGGTCAATTCAACTGTGGTATCTGCTGCCATGCTTAGAATTTTTAGCAGAGATGTTGCAGAACTCCCTATAGTTGCAACGAGTAGTGGTAACCATGGAAAGGGCTACTTCCAAATACTGTTCTCTTGCATCGAGAAACTACTGTCTTTTTTGAATGTGAAGAACCTTGTGCTACCAGCTGCTGAAGAAGCAGAGTCCATATGGACAGAGAAATTTGGGTTCAACAAGATGAAACCTGACGAGCTTAGCAACTATAGAAAGAACTGCCATCAGATGGTGGCATTCAAAGGGACATCCATGCTTCAGAAAATGGTTACTCCATGTCCAGTAATCGAAGATCAATCCTGA 2922 0.4261 MLILSNFSSNGLHLLSALIRAVVKEAMKQDLESTAVLKGQSHDQCDAFVPTLASETLSESHMMINLQVTENSSSKILRGSVVNGYIVYTREKKSRHLCDGSSENGKVKRVRTSERRANEHLPVVDGGGRVEVDNVENKIEIGFHCNMEKHKSCNDLEGEPAQHLAGEGGLNEVPVVITNNVDVQTDVVDKALKRYTRSVLQPKVESFDKAGTMSEASQTENTKSDGKVNAAASALTTPRNKLELKMSKKIVLNKKPMTVKELFDTGLLDGVSVVYMGGKKASGLRGIIKDGGILCSCCLCNGRRVIPPSQFEIHACKTYRRAAQYICLENGKSLLELLRACRGGPLHTLEATIQNIVCSPPEEKYFTCKKCKACFPTSCVVRVGSICNSCVESKESEDSSIVVVGKRVRSPRPVSVSKQSRTSELCISSQIKRHWKKRSKSSKWLSSSVSSKSSSVPILSRKKSLWRMKKKFVLPLSSKLLAKLKTPRTTSNSKCLSSQNKSHWRITKKDQRLHKLVFEEGGLPDGTEVAYYARGQKLLEGYKKGFGIFCRCCNSEVSPSQFEVHAGWASRKKPYAYIYTSNGVSLHELAISLSKGRKYSAKDNDDLCIICWDGGDLLLCDGCPRAFHKECVSLSSIPCGDWYCKFCQNMFQRERSVAHNANAVAAGRVEGVDPIEQITKRCIRIVKDIEAELSGCALCRGYDFSRSGFGPRTIILCDQCEKEYHVGCLRDHKMSYLKELPKGDWFCCLDCSTIHSSLQNLLIRGAENLPEPLLDLIKKKQEKKGLESLNDIDVRWRLLNGKIASPETRPLLSKAVSIFHECFDPIVDPISGRNLIPAMVYGRNVRGQEFGGMHCAILMVNSTVVSAAMLRIFSRDVAELPIVATSSGNHGKGYFQILFSCIEKLLSFLNVKNLVLPAAEEAESIWTEKFGFNKMKPDELSNYRKNCHQMVAFKGTSMLQKMVTPCPVIEDQS 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1028 973 ProSitePatterns Zinc finger PHD-type signature. 608 647 IPR019786 -
Glsi11g1028 973 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 851 937 IPR016181 -
Glsi11g1028 973 SMART PHD_3 695 752 IPR001965 -
Glsi11g1028 973 SMART PHD_3 607 648 IPR001965 -
Glsi11g1028 973 Pfam Tify domain binding domain 286 341 IPR032308 -
Glsi11g1028 973 Pfam Tify domain binding domain 541 591 IPR032308 -
Glsi11g1028 973 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 692 754 IPR013083 -
Glsi11g1028 973 MobiDBLite consensus disorder prediction 209 230 - -
Glsi11g1028 973 PANTHER AUTOIMMUNE REGULATOR 140 962 - -
Glsi11g1028 973 SUPERFAMILY FYVE/PHD zinc finger 595 649 IPR011011 -
Glsi11g1028 973 ProSiteProfiles Forkhead-associated (FHA) domain profile. 36 87 IPR000253 GO:0005515
Glsi11g1028 973 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 594 683 IPR013083 -
Glsi11g1028 973 ProSiteProfiles Zinc finger PHD-type profile. 605 650 IPR019787 -
Glsi11g1028 973 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 594 671 - -
Glsi11g1028 973 SUPERFAMILY FYVE/PHD zinc finger 687 749 IPR011011 -
Glsi11g1028 973 MobiDBLite consensus disorder prediction 211 230 - -
Glsi11g1028 973 Gene3D - 800 962 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1028 Glsi-ChrGlsi11 6465668 6472760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1028 72 970 PHD Transcription Factor Family AT2G36720 47.138 0.0 839