Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1027 ATGAGACTGAACAGAACCCTCTTTTGGCTCTTTGGCTTTGTCACTTTTTGCCTTGCTATCATAATTGCTCGTTATAGCACGCCTCCTTCCTTCACCACTATTTCTGCCATTGATCCTCAAAATGATTTCAACCGGCTTGGTATTTTAAGTAGGATTATAAAGCTCAGTGGCGCTCAAGACCTTGTGTCTCTACTAACGAGTGTTGCAACGAGGCATCACCACCACAGGAAGCGCAAGGACAAATGTGACAGGACCAAATGGGATTCCAGGCTCATTCTCCACTACAATGTGACTCTTGTTTTGACGGTTGACTTAAAGGGTTGCGCCAACTTTAGTAGCGTGCAGAAAGCAGTGGACGCTGTTCCTGAATCTAGTCCTGATAGGACCCTTATTATAATCGATTCTGGCACATACAGAGAGAAGGTAGTGGTGCAGGCCAACAAAACAAACTTAATAGTCCAAGGTCAAGGGTATCTTAACACAGTCATAGAATGGAATGACACCGCCAACTCTACAGGAGGGACTTTTAATAGCTACTCCGTTGCCATCTTTGCTTCTAAGTTCGCTTCTTATAACATCAGCTTTAAGAATACATCTCCGGCGCCCTTACCGGGTGAGGTTGGAGCACAGGCAGTGGCACTGAGAGTTTCTGGTGATCAAGCAGCATTCTATGGATGCGGATTCTACGGTGCTCAGGACACGCTAAATGATGATAATGGGAGGCATTATTTTAAAGAATGTTTCATCCAAGGATCTATTGATTTCATATTTGGAAACGCTAGATCGCTTTATGAGGATTGCAGCATTAATTCTATAGCAAAAGAAGAGGGGGCTGGGATTAGCGGCTCCATCACAGCACAAGGACGGCAGTGGGAGAGTGAGCAAACAGGGTTTTCGTTTGTGAAGTGCAGCATTAGTGGAAGTGGGAAAGTGTGGCTAGGAAGAGCTTGGGGAGCATACGCCACAGTAGTCTTCTCCTTAACAAATATGTCTGATGTCGTAGCTGCCGATGGATGGAACGATTGGACGGACCTCTCCAGAGACCAGAACGTCTTCTTTGGGGAGTACCACTGTTTCGGAGCTGGAGCCAACTATTCGTCTAGAGTCTCGTATGGGAAGCAACTCGGGGACTATGAAGTGGCCCCCTACTTGGATGTTTCTTACATTAATGGAACCGATTGGCTTCTCAATCATCAAAGTTACTAA 1206 0.4577 MRLNRTLFWLFGFVTFCLAIIIARYSTPPSFTTISAIDPQNDFNRLGILSRIIKLSGAQDLVSLLTSVATRHHHHRKRKDKCDRTKWDSRLILHYNVTLVLTVDLKGCANFSSVQKAVDAVPESSPDRTLIIIDSGTYREKVVVQANKTNLIVQGQGYLNTVIEWNDTANSTGGTFNSYSVAIFASKFASYNISFKNTSPAPLPGEVGAQAVALRVSGDQAAFYGCGFYGAQDTLNDDNGRHYFKECFIQGSIDFIFGNARSLYEDCSINSIAKEEGAGISGSITAQGRQWESEQTGFSFVKCSISGSGKVWLGRAWGAYATVVFSLTNMSDVVAADGWNDWTDLSRDQNVFFGEYHCFGAGANYSSRVSYGKQLGDYEVAPYLDVSYINGTDWLLNHQSY 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1027 401 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 94 395 - -
Glsi11g1027 401 Gene3D - 95 400 IPR012334 -
Glsi11g1027 401 Pfam Pectinesterase 102 372 IPR000070 GO:0030599|GO:0042545
Glsi11g1027 401 FunFam Pectinesterase 95 400 - -
Glsi11g1027 401 SUPERFAMILY Pectin lyase-like 98 395 IPR011050 -
Glsi11g1027 401 ProSitePatterns Pectinesterase signature 2. 249 258 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1027 Glsi-ChrGlsi11 6461870 6463783 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1027 93 395 Carbohydrate Esterase AT1G05310 54.248 1.86e-118 348