Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1015 ATGGCCTTGCCTTTAACAACCCTGTTGCTATTTCTTGTTGCGCTTATACTTCCTGATGTCCATGCAACAGAGTTTCAACCTGGCCCATGGAAGAAAGCTCAGGAACATTTGGGGGGAGCTTGTGGATACGAGGATGTTGTTAAACAAGGGCATAATCTTGATACGGCAGCAGCGAGTACAGCTACGTTCAACCAGGGGGAGACATGCGGTGCGTGTTACGAAATCCGATGTGTGGACTCCCCTCAAGGGTGTAAGCCAGGCCAACCATCTATTAATGTCACAGCCACTGACCTTTGCCGTCTCCCAATTATAAACAAGCAGGCAACAATGGAGGATGGTGCAATCCACCACGCGAGCACTTTGATTTAG 369 0.4905 MALPLTTLLLFLVALILPDVHATEFQPGPWKKAQEHLGGACGYEDVVKQGHNLDTAAASTATFNQGETCGACYEIRCVDSPQGCKPGQPSINVTATDLCRLPIINKQATMEDGAIHHASTLI 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1015 122 Pfam Lytic transglycolase 55 101 IPR009009 -
Glsi11g1015 122 SUPERFAMILY Barwin-like endoglucanases 8 100 IPR036908 -
Glsi11g1015 122 PRINTS Expansin signature 50 64 IPR002963 GO:0009664
Glsi11g1015 122 PRINTS Expansin signature 91 101 IPR002963 GO:0009664
Glsi11g1015 122 PRINTS Expansin signature 77 88 IPR002963 GO:0009664
Glsi11g1015 122 PANTHER EXPANSIN-A15 21 100 IPR002963 GO:0009664
Glsi11g1015 122 SMART dpbb_1 55 119 IPR007112 -
Glsi11g1015 122 Gene3D - 18 119 IPR036908 -
Glsi11g1015 122 PRINTS Expansin/Lol pI family signature 37 55 IPR007118 GO:0005576
Glsi11g1015 122 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Glsi11g1015 122 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 38 99 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1015 Glsi-ChrGlsi11 6389041 6389690 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1015 4 99 Expansin Gene Family AT3G55500 42.202 2.02e-24 92.0