Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1012 ATGGATCGTGAATGGGGTTCGAAGCCTGGCAGCGGAGGCGCCGCCTCCGCCCAGAACGAAGCCATCGACCGTCGTGAGCGTCTCCGCCGACTCGCCCTTGAGACTATTGATCTTGCCAAAGACCCCTACTTCATGCGCAACCATCTTGGAAGCTATGAGTGCAAGCTCTGTCTCACTTTACACAATAATGAAGGGAATTACTTGGCGCACACACAGGGTAAGCGGCATCAGACTAATTTAGCCAAGAGAGCAGCTCGCGAGGCCAAAGAGGCACCCGCTCAACCTCAGCCCCACAAGCGTAAAGTTTCGGTTCGCAAGTCAGTGAAGATCGGTAGGCCTGGGTACCGAGTGACTAAGCAATATGATCCAGAGACTAAGCAGAGATCTCTTCTTTTCCAGATTGAATATCCTGAGATTGAAGACCTTACAAAGCCAAGGCATCGATTTATGTCATCTTATGAGCAGAGGGTGCAACCCTTTGATAAAAGATACCAGTATCTTTTGTGCGCAGCCGAACCATATGAGATAATTGCCTTCAAGGTTCCCAGCACAGAGATTGATAAGTCAACACCGAAGTTTTTCTCACACTGGGACCCAGACTCAAAGATGTTCACGTTGCAATTGTATTTCAAGTCCAAGCCGCCAGAGGCAAACAAACCCCAGCCTCCCTCTACAGCCAATGGCACAGCTGCACCTGGTGTCCCATCAAGGCCTTTGCCTCCACCCCCCCAAGCTCCGCCACCACCACCACCTCCACCTCATGGGTTACCTACTGGTGCACCTCTTGGAAATCCTCCTAGAGCCCCTCCACCTCCAATGCCTGGATCATTACCCCCTCCACCTCCTATGGCAAATGGCCCTCGACCTGCACCTCCTGGTGGAATGCCTTCTATCCCACCCCCACCCGCTCTTGCTAGCAGCGCAAGTTTCAACATGGGTACAAGACCTCCATCAATGCCACCTGGGCAAGGTTTTCCAGGACAAATGCAGGGCCAGGTTGTTCATCCACCTCCACCCCCTCGAATGGGACATAAAACTGTTGGGTTCCAACAATTTGTACAAAGCCATCTGGTATTTTACATTTGTGCGTTTGGAGAATGCATGTAG 1107 0.5176 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKSVKIGRPGYRVTKQYDPETKQRSLLFQIEYPEIEDLTKPRHRFMSSYEQRVQPFDKRYQYLLCAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPPEANKPQPPSTANGTAAPGVPSRPLPPPPQAPPPPPPPPHGLPTGAPLGNPPRAPPPPMPGSLPPPPPMANGPRPAPPGGMPSIPPPPALASSASFNMGTRPPSMPPGQGFPGQMQGQVVHPPPPPRMGHKTVGFQQFVQSHLVFYICAFGECM 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1012 368 Gene3D - 93 218 - -
Glsi11g1012 368 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 339 - -
Glsi11g1012 368 Gene3D Classic Zinc Finger 46 89 - -
Glsi11g1012 368 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Glsi11g1012 368 SMART CactinC_cactus_3 89 217 - -
Glsi11g1012 368 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Glsi11g1012 368 MobiDBLite consensus disorder prediction 1 21 - -
Glsi11g1012 368 SUPERFAMILY beta-beta-alpha zinc fingers 48 83 IPR036236 -
Glsi11g1012 368 MobiDBLite consensus disorder prediction 234 303 - -
Glsi11g1012 368 PRINTS Proline rich extensin signature 280 305 - -
Glsi11g1012 368 PRINTS Proline rich extensin signature 262 279 - -
Glsi11g1012 368 PRINTS Proline rich extensin signature 236 252 - -
Glsi11g1012 368 PRINTS Proline rich extensin signature 211 232 - -
Glsi11g1012 368 MobiDBLite consensus disorder prediction 87 106 - -
Glsi11g1012 368 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Glsi11g1012 368 MobiDBLite consensus disorder prediction 213 341 - -
Glsi11g1012 368 FunFam Splicing factor 3a subunit 2 94 218 - -
Glsi11g1012 368 Pfam Zinc-finger of C2H2 type 52 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1012 Glsi-ChrGlsi11 6368923 6372065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1012 1 228 C2H2 Transcription Factor Family AT2G32600 88.596 1.22e-140 399