Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g1009 ATGAAGGGCAAGCGCACCAAGCGTCAAAGGCCATCATCCCCAACTTGTTCAAGTGGCTTTGATCTCGAAAATACCTCACCCACCACCTCAGCTGACTTCAGGGACAGCACCCAAGAAGAGGAGGACATGGCCAATTGTTTGATTCTTTTGGCTCAAGGACGTACCGCCCGGAAGGCCTCCGACTCCGTGCTTCCCCCACCTGTCCTTTACCAGTGCAAAACTTGTAACCGATGCTTCCCTTCCTTCCAAGCGCTTGGTGGCCACAGAGCCAGCCACAAGAAATCTGATAAGCTCAATACAGATCCAGAAAAGCAAGCTGTTACTTTTGTGAATGATTCTAATGACCCCAGCCTCTCCTTGCGAATATCAAACAGCGCTTTGTATAGCAGCACTGGTAAATCCAAAGTTCATGAGTGCTCCATATGTGGGGCCGAGTTCTCTTCCGGGCAAGCCTTGGGGGGTCATATGAGGCGCCACAGAACTTTTGTCAACGCGTCTACAAGCAGCCCTGAATCCCAAGAAGCCAAGAAACCCCGAAGCGTTTTGAAGTTGGACTTAAATCTTCCCGCACCAGAGGATGACCCCAGAGAACCCAAGCTTGCGTTTCAGCCCAAACAAAATGCTCTTGTCTTCTCTGCATCTTCTCTGGTTGATTGCCATTACTGA 666 0.503 MKGKRTKRQRPSSPTCSSGFDLENTSPTTSADFRDSTQEEEDMANCLILLAQGRTARKASDSVLPPPVLYQCKTCNRCFPSFQALGGHRASHKKSDKLNTDPEKQAVTFVNDSNDPSLSLRISNSALYSSTGKSKVHECSICGAEFSSGQALGGHMRRHRTFVNASTSSPESQEAKKPRSVLKLDLNLPAPEDDPREPKLAFQPKQNALVFSASSLVDCHY 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g1009 221 ProSitePatterns Zinc finger C2H2 type domain signature. 139 159 IPR013087 -
Glsi11g1009 221 Gene3D Classic Zinc Finger 68 159 - -
Glsi11g1009 221 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 97 IPR013087 -
Glsi11g1009 221 PANTHER ZINC FINGER PROTEIN ZAT5 10 206 - -
Glsi11g1009 221 MobiDBLite consensus disorder prediction 10 33 - -
Glsi11g1009 221 SUPERFAMILY beta-beta-alpha zinc fingers 69 159 IPR036236 -
Glsi11g1009 221 MobiDBLite consensus disorder prediction 1 39 - -
Glsi11g1009 221 Pfam C2H2-type zinc finger 136 160 - -
Glsi11g1009 221 Pfam C2H2-type zinc finger 70 94 - -
Glsi11g1009 221 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Glsi11g1009 221 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 159 IPR013087 -
Glsi11g1009 221 SMART c2h2final6 70 92 IPR013087 -
Glsi11g1009 221 SMART c2h2final6 137 159 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g1009 Glsi-ChrGlsi11 6360171 6360836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g1009 1 221 C2H2 Transcription Factor Family AT5G03510 40.794 8.76e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi11g1009 zf-C2H2_6 7.8e-13 CL0361