Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0989 ATGGGTAGAGCTCCTTGCTGCGACAAGGCGAATGTAAAGAAAGGGCCATGGTCTCCTGAAGAAGATGCAAAGCTGAAGGAGTATATAGAGAAACATGGGACCGGAGGGAATTGGATTGCTTTCCCACAAAAAGCTGGTTTGAAAAGATGTGGGAAAAGCTGTAGATTAAGATGGCTTAACTATCTCAGACCCAACATTAAGCACGGCGAGTTCTCCGACGAGGAAGATAGGATCATCTGCAGCCTCTTTGCTAGCATTGGAAGCAGGTGGTCAATAATAGCAGCTCAGTTGCCAGGCAGGACTGACAATGATATCAAAAACTACTGGAACACCAAGCTCAAGAAGAAAGTGATGGGCATCAATCCTTCAGCTCAGTGGAAGCCTCACCAAGCTACCCTTTTAACGAATCTTCAAAATTCGTCATCATCTTCACCCTCATCATTCAGGGACAGCACCAACTCTTACTACCATCCTAACGTGTCTTTCACAGGGTCTGAGTCCCTTTCGTACTCGTCAACTCTTTTGAGTGGCAGTTCTGCTACTTGTGCTGACTTCATATTTCAACCCCAAGATAATTTTATGGGACCGGTTCAGAATTACCAAGTTAAAGATAGTGCGTTTAATATGGTACGGGGCGAGGCTAGTTGCAGCTCTTCTGATGGGAGCTGCAATAACCAGATCAGTCATGTCAAAGAAGCAGAATTTGTATACGGTGGATGTGGGCATGGCGATGGAACTTTGGTCGACCAGATAATAGGCGTGCATAATTGTCCCAACAGTGGGGTGGAAGAAACTCGGAACTTGATGCTTTCCGATGCTGGTTGCATTGATGGGTGGACACACAAAGAAATTGGATTTTGGGGGGAGAACCCTTTATTAGATTATGGTATAGAAGAAATAAAACAGTTGATAGGCACTAGCAGTTGCAGCAACTTTTTTGCATGA 945 0.4487 MGRAPCCDKANVKKGPWSPEEDAKLKEYIEKHGTGGNWIAFPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKVMGINPSAQWKPHQATLLTNLQNSSSSSPSSFRDSTNSYYHPNVSFTGSESLSYSSTLLSGSSATCADFIFQPQDNFMGPVQNYQVKDSAFNMVRGEASCSSSDGSCNNQISHVKEAEFVYGGCGHGDGTLVDQIIGVHNCPNSGVEETRNLMLSDAGCIDGWTHKEIGFWGENPLLDYGIEEIKQLIGTSSCSNFFA 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0989 314 Gene3D - 7 68 - -
Glsi11g0989 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Glsi11g0989 314 FunFam Transcription factor RAX3 7 68 - -
Glsi11g0989 314 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Glsi11g0989 314 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Glsi11g0989 314 SMART sant 13 64 IPR001005 -
Glsi11g0989 314 SMART sant 67 115 IPR001005 -
Glsi11g0989 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Glsi11g0989 314 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Glsi11g0989 314 PANTHER OS09G0431300 PROTEIN 1 225 - -
Glsi11g0989 314 CDD SANT 16 62 IPR001005 -
Glsi11g0989 314 CDD SANT 70 113 IPR001005 -
Glsi11g0989 314 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Glsi11g0989 314 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Glsi11g0989 314 FunFam Transcription factor MYB36 70 141 - -
Glsi11g0989 314 Gene3D - 69 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0989 Glsi-ChrGlsi11 6246160 6247550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0989 1 119 MYB Transcription Factor Family AT5G57620 89.076 2.61e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi11g0989 Myb_DNA-binding 6.5e-14 CL0123