Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0953 ATGGCCACCTCTGCAGCTTCCTTAGCCCTTCCCACTCTCAGTTCTAGATCCCAATCTCTCTGCTCTTCGAGACAAGCGCTGTTCTCCTCTCTCAGACTTAAGTTGAAGCCCGTCTCTATATCTGCGTCTTTTCTTCACTTGGTCAGACCTTCTCCCTCTTTGTCATCTCGTTTCGTCCGGAATGTTACCCTTTCTTCTGAGTTCGACCAAGAAGAGATTTTGAGTGATGGAGATCAGCCCAGCTACTCCTCCGACCTCAAGCTCTTTGTGGGTAATCTTCCTTTCAGCGTAGATAGTGCCCAACTTGCTGAATTGTTCGAGAGTGCTGGGAATGTAGAGATGGTTGAGGTAATTTATGATAAAATGACCGGAAGAAGCAGGGGATTTGGTTTTGTGACCATGTCTACCGCTGAGGAAGTTGAAGCAGCCGCTCAACAGTTCAATGGCTATGAACTGGACGGAAGGGCGTTGAGGGTAAATTTTGGACCTCCTCCCCGGAAGGAGAATTCCCCTTTTAGAGTTGCCAGAGGTGGTTCTGCTTCAGATTCTGGAAATCGTGTTCACGTAAGTAATCTTGCTTGGGGTGTTGATCACTTGGCGCTTGAGACATTGTTTGGTGAGCTAGGAAAGGTTTTGGAAGCAAAGGTTATTTATGACAGGGAAAGTGGAAGATCAAGAGGATTTGGATTTGTGACTTACAGTAGTGCTCAAGAGGTTAACAGTGCTATTGAATCCTTAAATGGTGTGGACTTGAATGGCAGACCTATTCGAGTATCATTGGCAGATGCCAAGCCAAGGCGTCAATTTTGA 810 0.4642 MATSAASLALPTLSSRSQSLCSSRQALFSSLRLKLKPVSISASFLHLVRPSPSLSSRFVRNVTLSSEFDQEEILSDGDQPSYSSDLKLFVGNLPFSVDSAQLAELFESAGNVEMVEVIYDKMTGRSRGFGFVTMSTAEEVEAAAQQFNGYELDGRALRVNFGPPPRKENSPFRVARGGSASDSGNRVHVSNLAWGVDHLALETLFGELGKVLEAKVIYDRESGRSRGFGFVTYSSAQEVNSAIESLNGVDLNGRPIRVSLADAKPRRQF 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0953 269 Gene3D - 181 269 IPR012677 -
Glsi11g0953 269 Gene3D - 65 180 IPR012677 -
Glsi11g0953 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 263 IPR000504 GO:0003723
Glsi11g0953 269 FunFam Ribonucleoprotein A, chloroplastic 64 186 - -
Glsi11g0953 269 SUPERFAMILY RNA-binding domain, RBD 81 185 IPR035979 GO:0003676
Glsi11g0953 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 164 IPR000504 GO:0003723
Glsi11g0953 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 158 IPR000504 GO:0003723
Glsi11g0953 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 257 IPR000504 GO:0003723
Glsi11g0953 269 SMART rrm1_1 186 259 IPR000504 GO:0003723
Glsi11g0953 269 SMART rrm1_1 87 160 IPR000504 GO:0003723
Glsi11g0953 269 SUPERFAMILY RNA-binding domain, RBD 171 267 IPR035979 GO:0003676
Glsi11g0953 269 CDD RRM2_NsCP33_like 186 261 - -
Glsi11g0953 269 PANTHER OS02G0815200 PROTEIN 19 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0953 Glsi-ChrGlsi11 6012789 6014677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0953 88 268 Eukaryotic Initiation Factors Gene Family AT1G49760 28.495 9.74e-14 68.9