Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0952 ATGGTTTCCGGTGCATCAAGATCTGTAAGGTTTCGGGATGATCTTAAAACTGAGATAAAAACAAGTAAACAAAGTCCAGTGTCAATGGCAGCCTATGAGAAGGTTGAAATAAGCAAGTTGTTTAAGGGAAGTGAACTTTCCAGGGTCTTTTCTGAGGATTACGATGCCAAGGAGGAGTTGATATTGGATCCAAGGGGAACTAGAGTGAACAGATGGAACAAAATCTTTTTAGTAGCATGTCTGATTTCTTTATTCGTGGATCCCCTCTTCTTTTACTTGCCAGTGGCTAAGAAAGAAAAGTGCATTGATATAGCTGCTAGGCTTGAAGTGTTCCTCACCATAATTCGGTCAATGGTTGATACTTTTTACATTTTTCAGATTTATGTTCGCTTTCAAACCGCTTTTGTTGCTCCTTCCTCTCGTGTTTTTGGTAGAGGAGAACTAATTATAGATGCTTCAAAGATTTCGTCAAGGTACCTTAAAAAAGACTTCTGGCTTGATGTAGTGGCTGCCCTACCTCTTCCACAGGTGTTAGTTTGGGCTATAATTCCAAATCTAAAGGGGTCACAAATGATTGCTTCAAGGCATATTCTGCGTCTTGTCACCATTTTCCAGTACCTCGAGAGGTTATATCTTATCTTCCCTCTATCATCCCAAATCATCAAGGCAACTGGGGTAATGATGGAAAAAGCCTGGGCTGGGGCAGCATATAATCTGATGCTTTATATGCTGGCAAGTCATGTTTTAGGATCCTGCTGGTACCTCTTAGCAATTGAACGGCAGGACGAATGTTGGAAGAAAGTTTGTGCTCTTCAGTACCCACACTGCCAGTATCATTATCTTGATTGTCAAAGCATAGGTGACCCAGCTCGGGCAACTTGGCTCAGATCAAGCAATGTCTCAGGTCTATGTGATCAGAACAGTAATTTTTTTCAGTTTGGCATTTTTGCTGACGCTCTGACTTTGGAAATTACGGGCTCAAAGTTCTTCAATAAATACTACTACTGTCTTTGGTGGGGACTGAGAAATCTCAGCTCTCTGGGACAGAATCTCTTAACAAGCACCAATGTTGCAGAGATAAACTTTGCTTTGATCATTGCAATTCTTGGCTTAGTGCTGTTTGCCCTGCTTATAGACAATATGCAAACCTACCTGCAATCCACGACTACGAGGCTGGAAGAATGGAGAATAAGAAGGAGAGATACAGAAAGATGGATGCATCACAGGCAGCTACCTCATGAGCTGAAGCAAAATGTGAGACGGTATGACCAATTCAGATGGGTTGCTACGCGGGGAGTTGACGAGGAAACCATTCTTAGAGACCTTCCCGTGGATATCAGACGTGACATTAAACGCCACCTATGCCTTAATCTAGTTCGACAAGTACCACTATTTGATCAGATGGATGAAAGGATGCTAGATGCAATATGTGAAAGACTGAAGCCCTCTCTGTGTACCCCAGGCACTAGCCTAGTTCGTGAAGGTGACCCTGTGAATGAGATGCTCTTCATTGTCCGAGGTCGCCTAGATTCTTACACCACCAATGGTGGCCGAACTGGGTTCTTCAATTCGATCCGAATTGGCCCAGGTGACTTCTGTGGTGAGGAGCTCTTGCCATGGGTTCTGGACCCTCGTCTAACTGCTGTCCTTCCTTCCTCAACTCGCACAGTAAAAGCCATCACCCCAGTGGAAGCTTTTGCCCTCACTGCAGAGGACTTGCAATTTGTAGCAGCCCAATTCCGCAGGTTGCACAGTAAACAACTGAGGCACACCTTCAGGTTCCACTCTCACCAATGGAGGACATGGGCTGCGTGCTTTATACAAGCAGCTTGGTTTACCTATAGGAAAAGAAGAGAGGCAGGGGAGCTGAAGAAAAAGGAGAATCTCATGCCGTGTGTGTCTCCAACCGCCACGGAATATTTCTCTGCACCTCTGCATCCCCCCATGCGCTCAAGTCTTAAAATGTATCCCAAGAGAGGTGGGAGTTTGCGATATGGTTCGGAACTAGACATTCTCGGTTCAATAAGGAAGCCCCTCGAACCAGATTTTACTAGCCAACAAGGATGA 2067 0.447 MVSGASRSVRFRDDLKTEIKTSKQSPVSMAAYEKVEISKLFKGSELSRVFSEDYDAKEELILDPRGTRVNRWNKIFLVACLISLFVDPLFFYLPVAKKEKCIDIAARLEVFLTIIRSMVDTFYIFQIYVRFQTAFVAPSSRVFGRGELIIDASKISSRYLKKDFWLDVVAALPLPQVLVWAIIPNLKGSQMIASRHILRLVTIFQYLERLYLIFPLSSQIIKATGVMMEKAWAGAAYNLMLYMLASHVLGSCWYLLAIERQDECWKKVCALQYPHCQYHYLDCQSIGDPARATWLRSSNVSGLCDQNSNFFQFGIFADALTLEITGSKFFNKYYYCLWWGLRNLSSLGQNLLTSTNVAEINFALIIAILGLVLFALLIDNMQTYLQSTTTRLEEWRIRRRDTERWMHHRQLPHELKQNVRRYDQFRWVATRGVDEETILRDLPVDIRRDIKRHLCLNLVRQVPLFDQMDERMLDAICERLKPSLCTPGTSLVREGDPVNEMLFIVRGRLDSYTTNGGRTGFFNSIRIGPGDFCGEELLPWVLDPRLTAVLPSSTRTVKAITPVEAFALTAEDLQFVAAQFRRLHSKQLRHTFRFHSHQWRTWAACFIQAAWFTYRKRREAGELKKKENLMPCVSPTATEYFSAPLHPPMRSSLKMYPKRGGSLRYGSELDILGSIRKPLEPDFTSQQG 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0952 688 CDD CAP_ED 464 595 IPR000595 -
Glsi11g0952 688 Gene3D Jelly Rolls 462 582 IPR014710 -
Glsi11g0952 688 SMART cnmp_10 464 595 IPR000595 -
Glsi11g0952 688 Gene3D Helix hairpin bin 390 455 - -
Glsi11g0952 688 FunFam Cyclic nucleotide-gated ion channel 1 391 455 - -
Glsi11g0952 688 Gene3D - 74 388 - -
Glsi11g0952 688 SUPERFAMILY Voltage-gated potassium channels 63 386 - -
Glsi11g0952 688 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 47 637 - -
Glsi11g0952 688 Pfam Ion transport protein 72 391 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Glsi11g0952 688 Pfam Cyclic nucleotide-binding domain 487 576 IPR000595 -
Glsi11g0952 688 ProSiteProfiles cAMP/cGMP binding motif profile. 464 549 IPR000595 -
Glsi11g0952 688 FunFam Cyclic nucleotide-gated ion channel 1 462 580 - -
Glsi11g0952 688 SUPERFAMILY cAMP-binding domain-like 393 586 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0952 Glsi-ChrGlsi11 6006370 6009405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0952 38 686 Ion Channels AT2G28260 66.615 0.0 907