Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0950 ATGATTACATTTATGGATTCAAAGGAGAAATCGAAAGAGGTTGACAAGTGCTTGGATCCTCAGCTATGGCATGCCTGTGCCGGTGGGATGCTGCAAATGCCACCCGTGAACACTAAGGTCTTTTACTTCCCTCAGGGCCACGCTGAGCATGCATGTGGACCTGTGGACTTCAGGACTTGCCCCCGCCTTCCCCCCTACATTCTATGCAGACTCGCCGCTATCAAGTACATGGCTGATCCCGACACAGACGAGGTCTATGCCAAACTTATGCTTGTTCCTCTCAATGGGATTGAGGCTGATTATGGCGACGATGGTGTTCGAGGCATCAATGGGTCTGAAACTCAAGACCAGTTCGCTTCATTTTCAAAAACCTTGACTCAGTCCGATGCCAACAATGGTGGTGGGTTTTCTGTTCCTAGATTTTGTGCGGAGACAATTTTTCCTCGTTTAGACTTCTCTGCGGATCCTCCTCTTCAATATATTTCTGCGAAAGATGTTCACGGCGAATCATGGAAATTTAAGCACATTTACAGAGGCACACCAAGGCGGCATCTTTTGACGACTGGGTGGAGTCCTTTCGTCAATAAGAAAAAGCTTGTTGCTGGGGATTCAATTGTGTTTCTAAGAGCAGAAAATGGGGATCTCTTTGTCGGGATAAGACGAGCTAAAAGGGGAATTGTTGGGCGGCTCGAGTGTTCGTCTGGTGGAAATTTTGCTGTCCCTTATGGAGGCTTTTCTGCCTTGATGAGGGAGGATGATAGGAAACTACTCACAAATGGTAATGGCAATGGAACGAGCTCAAGTGGGAGTACGATGGGCAGGGGGAAAGTGAGGGCTGAAGCAGTTATTGAAGCTGCAACTCTTGCTGCCAATGGCCAACCCTTTGAGGCCGTTTACTATCCTCGGTTAAGTACTCCAGAGTTCTGTGTGAAGGCCACCTTAGTTAAAGCAGCACTGCAGACTAGGTGGTGTTCTGGACTGAGGTTCAAGATGCGCTTTGAAACTGAGGATTCGTTAGAGATAAGTTGGTTTATGGGAACTATATCTTCAGTTCAGGTTGCTGATCCCCACTCCTGGCCTGATTCACCTTGGAGGCTTCTCCAGGTTACATGGGACGAACCAGATTTACTTCAAAACGTGAAACGGGTCAGCCCGTGGGTGGTTGAATTGGTATCAACCATGCCTGCGATCCCTCCTTCCCCTTACTCACCACCGCCACGGAAGAGATTGAGATTGCCTCAACATCCAGATTTTTCCCTTGATGGCCAAATTTGTGTGCCAACATTTCCCAGCAACCTCGTAGGTCCCGGAAATCCCTTTGGTTATCTACCTGAAACTACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTTATTATGGTCTATCCTTACCGGATCTCCACTTCAGTAAATTGCAGTCAAGTCTATTTCTGGGAGGTTTCCGACCCCTTGATCATGCTGCTATGCAAACGAGGGTCTCTAACCCAACAGTACAAAATCCCAGCATGAGTGAGAATGTCTCTTCCTTACTATCCATGGAAAATTCTTTGAATAAACTGGATAATGCGAAGACACCCCACATTGTGCTTTTTGGCCAAACAATTCTTATTGAGCAGCACATGTCTACCAGCTGCTCTCCTGACACAGTCTCCCCAGTTCTTACTGGAAATAGTTCATCTGATGGAAATGCTGATAAAGTGACTAATTTTTCTGATGGTTCTGGATCTACCCTTCATCAACGACGCCTACCGGAACGCTCCTACTGTGAGAGATTCCAATGGTACAAGGATAACCCTCAAGAAACCGCGGCCAATTTGGAAACTGGCCACTGTAAAGTTTTCTTGGAATCACAAGATTCAGGTCGGACCATGGACCTCTCGGTTCTTGGGTCTTACAGTGAACTGTCCAGAAAGCTGACAGACATGTTCGGCTCAGAAAAATCGATGATGACGAGCCACGTGCTTTACCGAGATACAACGGGGGCAGTCAAACACGTTGGGGAGGAACCATTCAGTGACTTTACAAAAACCGCTAGGAGGTTGACGATTTTAATGGATTCAAGCAGTGACATTGACAATAGCAGGATAACATATATACAGAAAATCTATAGGAACAACCCCAGGCAAGAGCAACTGAAGTGCAATATCGATGGCTCTATAATCAATTTTAACAGTGAGTTGCGGTGGCATCTTAAGAAACGCGACTGGTGGGTGGAAATTGGGGTTTACCAAAAATTTGGGAATCTACAGTATAACCAAGGTAGAGCTTTGGGGAGTCTTATTGGCTACAAGCCTAGCGTGGGATCTAATTCAGCCGTAGCAATGGACCTTTGCAACAGAGGATTTAACAAGGAACATCCTTGTGCTGGTTTGGTTTTCTATCTGAAGTCTTTTCTAAACAAAGAGTGGAGTGTGTCAGCAACACATAGAGAGAGTAACAGAATGACTGATTGGTTTGCAGGAAATTACATTCTATGTACTCAGGTTAGAAGAAAATGA 2496 0.4619 MITFMDSKEKSKEVDKCLDPQLWHACAGGMLQMPPVNTKVFYFPQGHAEHACGPVDFRTCPRLPPYILCRLAAIKYMADPDTDEVYAKLMLVPLNGIEADYGDDGVRGINGSETQDQFASFSKTLTQSDANNGGGFSVPRFCAETIFPRLDFSADPPLQYISAKDVHGESWKFKHIYRGTPRRHLLTTGWSPFVNKKKLVAGDSIVFLRAENGDLFVGIRRAKRGIVGRLECSSGGNFAVPYGGFSALMREDDRKLLTNGNGNGTSSSGSTMGRGKVRAEAVIEAATLAANGQPFEAVYYPRLSTPEFCVKATLVKAALQTRWCSGLRFKMRFETEDSLEISWFMGTISSVQVADPHSWPDSPWRLLQVTWDEPDLLQNVKRVSPWVVELVSTMPAIPPSPYSPPPRKRLRLPQHPDFSLDGQICVPTFPSNLVGPGNPFGYLPETTPAGMQGARHAYYGLSLPDLHFSKLQSSLFLGGFRPLDHAAMQTRVSNPTVQNPSMSENVSSLLSMENSLNKLDNAKTPHIVLFGQTILIEQHMSTSCSPDTVSPVLTGNSSSDGNADKVTNFSDGSGSTLHQRRLPERSYCERFQWYKDNPQETAANLETGHCKVFLESQDSGRTMDLSVLGSYSELSRKLTDMFGSEKSMMTSHVLYRDTTGAVKHVGEEPFSDFTKTARRLTILMDSSSDIDNSRITYIQKIYRNNPRQEQLKCNIDGSIINFNSELRWHLKKRDWWVEIGVYQKFGNLQYNQGRALGSLIGYKPSVGSNSAVAMDLCNRGFNKEHPCAGLVFYLKSFLNKEWSVSATHRESNRMTDWFAGNYILCTQVRRK 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0950 831 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
Glsi11g0950 831 Gene3D - 119 223 IPR015300 -
Glsi11g0950 831 SUPERFAMILY DNA-binding pseudobarrel domain 114 222 IPR015300 -
Glsi11g0950 831 Gene3D - 322 396 - -
Glsi11g0950 831 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 685 IPR044835 GO:0003677|GO:0006355|GO:0009725
Glsi11g0950 831 FunFam Auxin response factor 323 396 - -
Glsi11g0950 831 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Glsi11g0950 831 MobiDBLite consensus disorder prediction 546 579 - -
Glsi11g0950 831 CDD B3_DNA 120 221 IPR003340 GO:0003677
Glsi11g0950 831 ProSiteProfiles PB1 domain profile. 607 687 IPR000270 GO:0005515
Glsi11g0950 831 SMART B3_2 121 223 IPR003340 GO:0003677
Glsi11g0950 831 Pfam Auxin response factor 285 368 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Glsi11g0950 831 Gene3D - 604 690 - -
Glsi11g0950 831 FunFam Auxin response factor 119 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0950 Glsi-ChrGlsi11 5984935 5989845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0950 1 689 B3 DNA Binding Superfamily AT4G30080 54.908 0.0 703
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi11g0950 B3 3.1e-21 CL0405