Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0949 ATGGAAACAATCAGTGACATCAATGTCTCCACGGAGAGCTTCTGCGTGAGCAGTACTGGGAGAGCTGACCCACTCAACTGGGGTGTAGCCGCTGAGTCACTCAAGGGCAGCCACCTGGACGAGGTGAAGCGCATGGTGGCTGAGTTCCGGAAGCCTTTGGTTCGGCTCGGTGGCGAGACACTGACTGTCTCGCAGGTGGCGGCCATCGCCAGCCACGACCAAGGGGTGAAGGTGGAGCTGTCGGAGTCGGCGAGGGCTGGTGTTAAGGCCAGCAGTGACTGGGTCATGGATAGCATGAACAAAGGCATCGATAGCTATGGTGTCACCACTGGGTTCGGTGCAACCTCGCATAGGCGAACCAAACAAGGTGCCGCTTTGCAGAAAGAGCTTATTAGGTTTTTGAACGCTGGAATATTTGGCAACGGCACAGAATCATGTCACACTCTGCCACACTCAGCAACCAGGGCAGCCATGCTCGTGAGAATAAACACTCTTCTCCAAGGGTACTCAGGCATTCGATTTGAAATCCTAGAAGCCATCACCAAGTTTCTCAATCACAACATTACTCCATGCTTGCCACTTCGTGGGACAATCACAGCTTCTGGTGATCTTGTCCCTCTTTCTTACATTGCGGGTTTGCTAACTGGGCGACCCAACTCTAAAGCTGTTGGACCTTCCGGAGAAGTCCTTAGTCCCCACCAAGCCTTTCAATTGGCAGGCATCGATTCTGAATTCTTTGAGTTGCAGCCCAAGGAAGGCCTTGCTCTTGTCAATGGCACTGCTGTTGGTTCTGGTTTAGCCTCTATCGTTCTTTTTGAGGCCAACATACTAGCCGTGTTGTCTGAAGTTTTATCTGCAATTTTTGCCGAAGTGATGCAAGGGAAGCCTGAATTTACAGATCATTTGACCCATAAGTTGAAGCACCATCCGGGCCAAATTGAGGCTGCTGCTATCATGGAACACATTTTGGATGGAAGCTCCTACGTAAAAGCAGCTCAGAAGTTGCACGAGATGGATCCCCTGCAGAAGCCTAAAAAAGATCGCTATGCCCTTCAAACTTCACCGCAATGGCTTGGTCCTCTCATTGAAGTAATCAGGTACTCCACCAAATCAATTGAAAGGGAAATTAACTCCGTGAACGACAACCCTTTGATCGATGTTTCAAGGAACAAGGCCTTGCATGGTGGTAATTTCCAGGGAACCCCAATTGGAGTCTCCATGGACAATACGCGTTTGGCTCTTGCATCCATTGGCAAACTCATGTTTGCTCAGTTTTCTGAGCTGGTCAATGATTTTTACAACAATGGGCTGCCATCCACTCTCTCTGCCAGTAGAAATCCCAGCTTGGACTATGGTTTCAAGGGGGCTGAAATTGCCATGGCATCTTACTGCTCTGAACTCCAATATCTTGCAAATCCAGTAACAAGTCACGTCCAAAGTGCTGAGCAGCACAACCAAGATGTAAACTCTTTGGGTTTGATTTCATCTAGAAAAACAAATGAAGCTATTGAGATCCTGAAGCTCATGTCTTCCACATTTTTAATCGCACTCTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAGAACACGGTAAAGAGCACCGTAAGTCAAGTTGCAAAGAGAACTCTCTCAACAGGCGTCAATGGAGAACTCCATCCTTCCAGACTTTGTGAGAAAGATCTGCTGAAAGTGGTGGATAGGGAGCAAGTCTTTGCCTACATTGATGACCCCAGCAGCCCTTCATACCCCTTGATGCAAAAACTAAGGCAGGTGCTTGTGGATCATGCATTAGCAGATGTCGATAATGAGAAGAACTTGAACACATCAATCTTCCAGAAGATTGGAACTTTTGAAGAGGAGCTGAAGACTGTCTTGCCAAAGGAGGTTGAAAGTGCAAGGACAGCATACGAGAACGGCAATCCAGTCATTCCAAACAAGATTAAGGAATGTAGGTCTTACCCACTGTACAAGTTTGTACGAGAGGAGTTGGGAACTGGGTTGCTAACTGGAGAAAAGACGAGGTCACCAGGTGAGGAGTGTGACAAAATGTTCACAGCTTTGTGCCAGGGCAAGATTATTGATCCTCTTCTGGAATGCCTTGGGGAGTGGAACGGTGCCCCTCTTCCAATCTGTTAG 2145 0.4797 METISDINVSTESFCVSSTGRADPLNWGVAAESLKGSHLDEVKRMVAEFRKPLVRLGGETLTVSQVAAIASHDQGVKVELSESARAGVKASSDWVMDSMNKGIDSYGVTTGFGATSHRRTKQGAALQKELIRFLNAGIFGNGTESCHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKFLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLSPHQAFQLAGIDSEFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEMDPLQKPKKDRYALQTSPQWLGPLIEVIRYSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSTLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLKNTVKSTVSQVAKRTLSTGVNGELHPSRLCEKDLLKVVDREQVFAYIDDPSSPSYPLMQKLRQVLVDHALADVDNEKNLNTSIFQKIGTFEEELKTVLPKEVESARTAYENGNPVIPNKIKECRSYPLYKFVREELGTGLLTGEKTRSPGEECDKMFTALCQGKIIDPLLECLGEWNGAPLPIC 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0949 714 PANTHER HISTIDINE AMMONIA-LYASE 18 714 IPR001106 -
Glsi11g0949 714 CDD PAL-HAL 59 524 IPR001106 -
Glsi11g0949 714 Pfam Aromatic amino acid lyase 61 535 IPR001106 -
Glsi11g0949 714 Gene3D - 527 648 IPR023144 -
Glsi11g0949 714 FunFam Phenylalanine ammonia-lyase 14 260 - -
Glsi11g0949 714 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 196 212 IPR022313 GO:0016841
Glsi11g0949 714 FunFam Phenylalanine ammonia-lyase 261 568 - -
Glsi11g0949 714 FunFam Phenylalanine ammonia-lyase 527 648 - -
Glsi11g0949 714 Gene3D Fumarase/aspartase (Central domain) 261 709 - -
Glsi11g0949 714 NCBIfam phenylalanine ammonia-lyase 23 703 IPR005922 GO:0005737|GO:0006559|GO:0016841
Glsi11g0949 714 SUPERFAMILY L-aspartase-like 23 714 IPR008948 GO:0003824
Glsi11g0949 714 Gene3D - 15 260 IPR024083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0949 Glsi-ChrGlsi11 5971815 5974697 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0949 23 714 Monolignol Biosynthesis Gene Families AT2G37040 83.960 0.0 1239