Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0939 ATGGTACCGTCCACCCGTGTTCCACTACTCACATCAATTATTTATAAGTTCCCAGAAGACGAGCTTTGTCTATTGCACAGTGAAGCATCAAATCATTGCAAGTGGTTTAGCCTCCTCCTCAAGGGTTATGCTTCTATCAGAGGAATGAAATTTCCTTGTTCTTTTACGACTTGTTTCTCGCCGTCGGTCAAACAGCAAACCAACCAAGATGTCTCAGCAAGGGATAGTGATGGAACATTGCAAGTATTCACTTACAGTGAATTAAAATCTGCCACTCATGGATTTCATTCCTCGGAAAAGGTTGGGGAAGGCGGCTTCGGCTCTGTCTACAAGGGGCGACTTCGGGATGGCACATTTGTGGCCGTGAAAGTGCTTTCCATTGATCTGGATTCCATTCGAGGAGAGAGGGAGTTTGTAGCTGAATTGGCTACACTCGCTGATATCAAGCACGAAAATCTAGTCACTCTTCGAGGGTGTTGTGTGGAAGGAGCTCGCAGATATTTAGTCTACGAGTACATGGAGAACAATAGCCTTTACCACTCCTTCTTAGGTACAAAGCATGGCAGGATGACATTCAGTTGGGAAGCAAGGAAAGACGTATCCATGGGAGTGGCCCGCGGACTTGCCTATCTCCATGAGGAAATTAAGCCCTATATTGTGCACAGAGACATCAAAGCCAGAAATATACTTCTTGACCGAAACTTAAAGCCAAAAGTTTCAGACTTTGGTTTGGCAAAATTACTGAGGGATGATAAGTCTTACATCAGTACTCAAGTTGCAGGGACATTGGGCTATCTTGCTCCAGAGTATGCCAGTTCTGGACAGGTGACACGAAAATCGGATGTTTATAGCTTTGGAGTATTACTCCTAGAAATTGTCAGCGGGCAAGTAGTGGTAGATCCTTATCAAGATATGGAACGTTTCCTGGTAGAGAAGGCGTGGGCAGCGTATGAAGCTAATGATCTTTTAAAAATGGTGGACCCTGAGCTAAATGGGAACTTTCCAGAGGAAGAAACCATACGATTCGTGAAGGTGGGGCTGCTTTGCGTGCAAGAAACCGCCAAGCTTCGGCCACGAATGTCAGAGGTTCTTGAAATGTTGGCTGACAAGATTGATATGGAAGGTGTTCGTATTTCAAAACCAGGGTTTGTAGCTGATCTCAGGGACATCAGAATTAGGAAGGGACTGCATTCATCCGCGGAATCAAGTTCTACTGGAGCAACGTATGAAAGCTCTATTTGGGATTCGGCTAATCTAGCCCGTTAG 1266 0.4518 MVPSTRVPLLTSIIYKFPEDELCLLHSEASNHCKWFSLLLKGYASIRGMKFPCSFTTCFSPSVKQQTNQDVSARDSDGTLQVFTYSELKSATHGFHSSEKVGEGGFGSVYKGRLRDGTFVAVKVLSIDLDSIRGEREFVAELATLADIKHENLVTLRGCCVEGARRYLVYEYMENNSLYHSFLGTKHGRMTFSWEARKDVSMGVARGLAYLHEEIKPYIVHRDIKARNILLDRNLKPKVSDFGLAKLLRDDKSYISTQVAGTLGYLAPEYASSGQVTRKSDVYSFGVLLLEIVSGQVVVDPYQDMERFLVEKAWAAYEANDLLKMVDPELNGNFPEEETIRFVKVGLLCVQETAKLRPRMSEVLEMLADKIDMEGVRISKPGFVADLRDIRIRKGLHSSAESSSTGATYESSIWDSANLAR 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0939 421 CDD STKc_IRAK 101 367 - -
Glsi11g0939 421 Gene3D Transferase(Phosphotransferase) domain 1 173 379 - -
Glsi11g0939 421 ProSitePatterns Protein kinases ATP-binding region signature. 101 123 IPR017441 GO:0005524
Glsi11g0939 421 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 65 402 - -
Glsi11g0939 421 Gene3D Phosphorylase Kinase; domain 1 56 172 - -
Glsi11g0939 421 FunFam Putative LRR receptor-like serine/threonine-protein kinase 173 379 - -
Glsi11g0939 421 ProSiteProfiles Protein kinase domain profile. 95 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g0939 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Glsi11g0939 421 SMART serkin_6 95 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g0939 421 Pfam Protein tyrosine and serine/threonine kinase 97 367 IPR001245 GO:0004672|GO:0006468
Glsi11g0939 421 SUPERFAMILY Protein kinase-like (PK-like) 77 367 IPR011009 -
Glsi11g0939 421 FunFam Serine/threonine-protein kinase receptor 63 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0939 Glsi-ChrGlsi11 5880165 5883308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0939 83 409 Receptor kinase-like Gene Family AT1G53440 46.809 1.08e-92 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi11g0939 PK_Tyr_Ser-Thr 4.7e-50 CL0016