Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0931 ATGCTTAAGCTTATGGGTTTCTCATCCGCCGTCGATGCGATAGCGTGGAGAGGATTGCTCTACACAATCTTCATACTCAATTTTGTTTTGGTCTGCCAGCTCATTCTCCTTCAACCGCTCGTTTCTGCTTTAGACAGAAAACCTGGAAATGCTGCCGAGTTATTTGAGAGGGTGTCGCAAAGTATAAAAGTAAAACGTTATACTGAGGCACTTGAAGATCTCAATGCTGCCATTGAAGCAGATCCAACCCTTTCAGAAGCATACTTTCACCGCGCATCACTTCTTCGTCAGATATGCAGATATGAGGAATCTGAGAGGAGCTACAAAAAGTTTCTGGAGTTAAAACCAGGAAATTTAGCAGCAGAAAAGGAGCTATCCCAGTTGTTCCAGGCTCAAAGTGCTCTAGAATCAGCTCAGTCACTCTTTGATTCGGGCAACTTTACAAAATCCTTGGAATATATTGATAAAATTGTGTTAGTTTTTTCTCCAGCTTGCTCAAAGGCTAAACTTCTAAAAGTAAAGTTGTTGATAGCTGATAGAGAGTATGAGGGTGCCATTTCTGAGTCTGGATTTATTCTTAAGGAAGATGAGAGTAATTTAGATGCGTTGTTGCTCCGTGGGCTTGCATACTACTATTTAGCTGATCATGATGTTGCCATGAGGCATTTTCAGATTGGTCTCCGCCTAGACCCAGAGCATAGGGAATTGAAAAAAGCATATTTTGGATTGAAAAATCTACTCAAAAAGAGTAAAAGCGCTGAAGATAATGTGAATAAGGGTAAGCTACGTGTGGCAGTGGATGAATTCAAAGCAGCACTGGCAGTTGATCCTAATCATCTTGCACATAATGTACATCTTCATCTTGGCTTATGTAAAGTACTAGTCAAGCTTGGCCGGGGAAAAGATGCTTTGAACAGTTGTAGTGAAGCTCTTAAGATCAATGAGGAACTTATTGAAGCTCTTGTTCAGAGGGGAGAAGCCAAACTCTTAACAGAGGATTGGGAGGGAGCTGTGCAAGATCTGAAATCAGCCGCTCAAAAATCTCCTCAGGATATGAATATTCGTGAAGCATTAATGAAAGCTGAGAAAGCTTTAAAGATGAGCAAGCGCAAGGACTATTACAAGATTTTGGGAATTTCAAAAACTGCTTCTGCCGCTGATATAAAACGTGCCTACAAGAAACTTGCTTTGCAATGGCATCCGGATAAGAATGTTGACAATAGGGAAGAAGCTGAGGCTAAATTCCAAGAAATTGCTGCTGCATATGAGGTTCTCAGTGATGAAGATAAACGTACTAGATATGACAGAGGAGAAGACCTTGAAGACATGGGAATGGGTGGCGGAGGTTTCAACCCTTTTGGTGGCGGGGGCCAGCAGTTTACCTTTACTTTTGATGGAGGCTTTCCCGGTGGGGGGTTTCCAGGTGGATATGGAGGAGGTTTTCCTGGCGGTGGCGGGTTTGAGTTTCATTTTTGA 1476 0.4234 MLKLMGFSSAVDAIAWRGLLYTIFILNFVLVCQLILLQPLVSALDRKPGNAAELFERVSQSIKVKRYTEALEDLNAAIEADPTLSEAYFHRASLLRQICRYEESERSYKKFLELKPGNLAAEKELSQLFQAQSALESAQSLFDSGNFTKSLEYIDKIVLVFSPACSKAKLLKVKLLIADREYEGAISESGFILKEDESNLDALLLRGLAYYYLADHDVAMRHFQIGLRLDPEHRELKKAYFGLKNLLKKSKSAEDNVNKGKLRVAVDEFKAALAVDPNHLAHNVHLHLGLCKVLVKLGRGKDALNSCSEALKINEELIEALVQRGEAKLLTEDWEGAVQDLKSAAQKSPQDMNIREALMKAEKALKMSKRKDYYKILGISKTASAADIKRAYKKLALQWHPDKNVDNREEAEAKFQEIAAAYEVLSDEDKRTRYDRGEDLEDMGMGGGGFNPFGGGGQQFTFTFDGGFPGGGFPGGYGGGFPGGGGFEFHF 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0931 491 Gene3D DnaJ domain 370 476 IPR036869 -
Glsi11g0931 491 FunFam DnaJ domain containing protein 38 369 - -
Glsi11g0931 491 SUPERFAMILY Chaperone J-domain 365 475 IPR036869 -
Glsi11g0931 491 SUPERFAMILY TPR-like 43 367 IPR011990 GO:0005515
Glsi11g0931 491 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 22 491 IPR044620 -
Glsi11g0931 491 SMART tpr_5 85 118 IPR019734 GO:0005515
Glsi11g0931 491 SMART tpr_5 51 84 IPR019734 GO:0005515
Glsi11g0931 491 SMART tpr_5 200 233 IPR019734 GO:0005515
Glsi11g0931 491 SMART tpr_5 284 317 IPR019734 GO:0005515
Glsi11g0931 491 SMART tpr_5 318 351 IPR019734 GO:0005515
Glsi11g0931 491 CDD DnaJ 372 427 IPR001623 -
Glsi11g0931 491 ProSiteProfiles TPR repeat profile. 200 233 IPR019734 GO:0005515
Glsi11g0931 491 ProSiteProfiles dnaJ domain profile. 372 438 IPR001623 -
Glsi11g0931 491 SMART dnaj_3 371 430 IPR001623 -
Glsi11g0931 491 Pfam Tetratricopeptide repeat 64 118 - -
Glsi11g0931 491 Pfam DnaJ domain 372 435 IPR001623 -
Glsi11g0931 491 ProSiteProfiles TPR repeat profile. 85 118 IPR019734 GO:0005515
Glsi11g0931 491 FunFam DnaJ subfamily C member 7 370 476 - -
Glsi11g0931 491 Coils Coil 408 428 - -
Glsi11g0931 491 Gene3D Tetratricopeptide repeat domain 38 369 IPR011990 GO:0005515
Glsi11g0931 491 PRINTS DnaJ domain signature 392 407 IPR001623 -
Glsi11g0931 491 PRINTS DnaJ domain signature 410 430 IPR001623 -
Glsi11g0931 491 PRINTS DnaJ domain signature 430 449 IPR001623 -
Glsi11g0931 491 PRINTS DnaJ domain signature 374 392 IPR001623 -
Glsi11g0931 491 ProSitePatterns Nt-dnaJ domain signature. 415 434 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0931 Glsi-ChrGlsi11 5850838 5855495 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0931 368 435 C2H2 Transcription Factor Family AT1G74250 47.222 2.59e-11 63.9