Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0930 ATGTCTGGTGACCCTTTTTCGTTAGCTACTTCGATCGGAGTGTTTGCTCAAGAACAAAACTCTAACCCTAACCCTAAATCTAATCCTCCTTCTGCGGCCAAGAAGAAGAGAAATCTACCAGGAACACCAGATCCAGATGCCGAGGTCATTGCGCTTTCACCGAAAACTCTCATGGCTACCAACCGATTCATATGTGAAATATGCAACAAAGGTTTCCAGAGAGATCAAAACCTTCAACTTCATCGGAGGGGTCACAACCTCCCGTGGAAGCTACGACAAAGGTCGAACAAGGAGGTCAGAAAGAAGGTTTACATCTGCCCAGAGAAGAGTTGCGTCCACCATGACCCGGCCAGAGCATTGGGCGACCTCACCGGGATAAAGAAGCATTTTAGCAGAAAACATGGGGAGAAGAAATGGAAGTGTGACAAGTGTTCCAAGAAATATGCAGTCCAATCTGACTGGAAAGCTCACACTAAGACCTGTGGAACTAGAGAATACAAGTGTGATTGTGGTACCCTCTTCTCCAGAAAGGACAGCTTCATTACCCACAGAGCTTTCTGCGATGCCTTAGCTGAAGAGAGTGCGAGACTCACCTCACTTGCTACTACAAATCTAAATTTTAAGAACGAAGAAACTGTGATGAGCTCACAACCTAGTTTGGAGCAGGGACTTCAAAATGTACAGGTAATTTCACAATATGGTCAACATGGGTTTCGTCCCGATTTTAATGGAATGGGCGTGGTTGGCAACTCACTCGGTGCTGACCAGCAAAGGCCAAGCTTGTCGATGTGGTTAAACCAGGGAAATATCCAGATTAATCCTCTTGATGTTGGAGCTAATTCAGGTCTTTACATGTCTTCAAGTTCTTCAGGTTTGCCTGATATCGTGCAAATGGCCCAAGCTAATGCTTTCGGGTCTTCTTCAGTATCTAATTTTGGAATGCCTGCTTCAAATTCAACCAAAGCAAACCTTTCTCTATCGTCACTACCCGCTGAGAAGAAGGGAGAAGTTGGAACTGGGAACTTAGCTTCTGTTTGTTTTGAGGGTCAAAACAAGGGATCAAAGCCAGCTTCCCCCATGTCAGCTACTGCGCTTTTGCAGAAGGCAGCTCAGATGGGTTCCACCAGAAGCGAAAACCCCTCCATTTTCAGCAGTAGTTTTGGAGTGATGAGTTCTTCTTCTTCCCAAACTACTAATAACGCCAACCAGGACCTTAACCAAGGCTTTCAGAGTATGAAGCAACCGGAGAATTTTGCTTCGACTAGCAGTGCAGCTATGCTGGTAAGTGCTAACTTTAACTCATTGACGTATACATCGAACAGTTTTGATCAACTTATGATGCAAACCAATGGAAAACAAAGTGAACAAGTGCAATTGAAGCTTTATCCTGGTTCCAACTCTGCGGAACACAGCTTAACAAGAGATTTTCTTGGCATGGGTGGAAGAGGATCTGGCACTCCTCCATTTCTATCCCATGAGCTGGCAAAGTTTGCTTCCATAGGCTCGCCAATGGTTGTTGCTGTTGTTGTTTTGCCTTCTGTCTTAACCTTGTTATCGTGGCCCATTTTAGATGTCCATTTCTATGTTATCCATCCCTTATATCATGTTTCTCTGAAGGAGCTCTTTGACGATAACAGATCTTATGTGAAAATTGTATGTGGAAAGCTCGACGAGCCCCAGTTGTCTCAAAATAGAAGAGATAAAAATAAGTTTCCATTGGACTATGTTTGGACGGTGGCTGATGAGAGCATCCCTAAATCCACGTGCGAATCTCTCATTGGTCCAAATACGTGGGATGACATTTGGGCTTCGTTTCTAATTTTATTTATGATTAGGCTTTCCTGCCTTGTGCCTGCCTGCGCGAATAGTGTAATCGGCATCCTCTCGGACGACCCTGCTCGATTTGTGGCCGTCTCAGTCTGTGAATTTGCTGGGATATCTGCTTACTCTTATGTGTGA 1959 0.4467 MSGDPFSLATSIGVFAQEQNSNPNPKSNPPSAAKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSLATTNLNFKNEETVMSSQPSLEQGLQNVQVISQYGQHGFRPDFNGMGVVGNSLGADQQRPSLSMWLNQGNIQINPLDVGANSGLYMSSSSSGLPDIVQMAQANAFGSSSVSNFGMPASNSTKANLSLSSLPAEKKGEVGTGNLASVCFEGQNKGSKPASPMSATALLQKAAQMGSTRSENPSIFSSSFGVMSSSSSQTTNNANQDLNQGFQSMKQPENFASTSSAAMLVSANFNSLTYTSNSFDQLMMQTNGKQSEQVQLKLYPGSNSAEHSLTRDFLGMGGRGSGTPPFLSHELAKFASIGSPMVVAVVVLPSVLTLLSWPILDVHFYVIHPLYHVSLKELFDDNRSYVKIVCGKLDEPQLSQNRRDKNKFPLDYVWTVADESIPKSTCESLIGPNTWDDIWASFLILFMIRLSCLVPACANSVIGILSDDPARFVAVSVCEFAGISAYSYV 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0930 652 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Glsi11g0930 652 Gene3D Classic Zinc Finger 41 115 - -
Glsi11g0930 652 MobiDBLite consensus disorder prediction 354 406 - -
Glsi11g0930 652 Gene3D Classic Zinc Finger 117 196 - -
Glsi11g0930 652 FunFam protein indeterminate-domain 12-like 42 110 - -
Glsi11g0930 652 MobiDBLite consensus disorder prediction 1 46 - -
Glsi11g0930 652 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
Glsi11g0930 652 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Glsi11g0930 652 FunFam protein indeterminate-domain 5, chloroplastic-like 117 196 - -
Glsi11g0930 652 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 487 IPR031140 -
Glsi11g0930 652 MobiDBLite consensus disorder prediction 1 31 - -
Glsi11g0930 652 MobiDBLite consensus disorder prediction 350 406 - -
Glsi11g0930 652 SMART c2h2final6 63 85 IPR013087 -
Glsi11g0930 652 SMART c2h2final6 139 159 IPR013087 -
Glsi11g0930 652 SMART c2h2final6 104 134 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0930 Glsi-ChrGlsi11 5844687 5850799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0930 1 249 IDZ Gene Family AT5G03150 64.413 2.57e-119 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi11g0930 None None None