Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0928 ATGAGTCATAGACATTTGTATAGCACACCTCAAATGTTTGAGAGTGAGCATGACCAAAATTGGAATCCTGTGCATACTGACCAACATTATGTGCACCTTGGCAGGGCTAGCACTTCAGAGAATGGTTCTTTCATTTATCCTGTGGAAAATATGTCTATAGATGGCATTTCTTTTGCCTCTAATTGGAACTCTGCCCCAAGGTCAAACGGATATGCATCCTCAAGTCTCAATATTGAAGTACCCCCTCATCAATCAGATGCATCAGGCACTCTGCATTCATCTAGTGCTGGAGCCTTCTTTGCAGTTTCTGAAAATTATGCTCAACAGCCTTCTTCCCATTATGATGGACAGGCATTTCATGTTGTTGATGGTGGTTTTATTGATCTTACAATGGGAAGTGGTAGAGCGCCTCACAAGCGAAAGAGCCCCGGAATTCCTTCAGTCTGTGAAAGAGGCAGTACAAGCAGATACTTCAATGCTGGAAGTTCAACTGATCTTCCTATATCTTCAGAGATACCGCAGGAAAAGCCATGTATGGATTCTCAATATATGCCTTGGGATCAAGTTACCATGCCACCCAACTTCAGAGGTAGTGGCCTTTCAATCAGGGGTGAGGGTTCTTTAAGGAATGTGAGAAGCCGTTCTGCACTTGATTTTGAATCCAACCTGGCTAGGACCCATTTATCCAGCAATCATTCACACAACTACTCTACTGGCCCACCCGTCAACCATGCTACCACGGTGGATCTTTCAGGTCAGAGTTCTAGCACTTTGACAAGGGATTGGAGTCAAATGGGGATATCTCCTTCTCATGGTAGGGTTTTATTACCAGATACAAGTGCTCTTAGTCATGAGACAAGTCCCTTCCTTGTTGGAAGTAGTGCTAGCAATGCATCTGTAGACGTTGGTGGTTACCATCATGAATATACTACAAGTAGAAATCCTACTGTTCCTGTTCCTGTTCCTCAAAGGTTTCATAATAATATGACTCAGACTGCTAGGGGAGTTCGCAGTAACTTATCACAAAGATCCGCTCCACCTTTTAGGGCTTCTTCAAGCTTGCGCTTAGGACATGTGGCACCTTTAGATGATGGATTGCAAATGGTTGCTGAAAGTAACTCCTCTAGACATCCAAGGCCATCAACAACTGTTGGCTGGCGGAACAGTGAAAGAAACAGGAGATCAAGGATTTCTAGTGATAGATATCGACCAGTGGCTGATGAGGTTGGTCTCCGTGATCGATTTTCTTCTGAGGGTTTCATGATTGTTGATCGTGCGTTACCATATGGTTCTAGAAATATGCTTGATCAGCACAGAGAGTTGAGGATGGACATAGACAACATGAGCTATGAGGAATTACTTGCTCTTGGAGAGAGGATTGGCCATGTCAGCACAGGATTGTCAGAGGATTTGATTCCAAAATGTTTGACAGAAACAATATATTTTTCATCCGAGCAAAGTGAAGAGGAAGGAACTTGTGTAATCTGTTTGGAAGAGTACAAGAACTTGGATGATGTGGGGACGCTGGAGACTTGCGGTCATGACTATCATGCGAGCTGCATTAGAAAGTGGTTATTTATGAAGAACCAATGCCCTATCTGCAAAGCTTCTGCTTTGCCTGATAATATGAAGGATAATTAA 1641 0.4327 MSHRHLYSTPQMFESEHDQNWNPVHTDQHYVHLGRASTSENGSFIYPVENMSIDGISFASNWNSAPRSNGYASSSLNIEVPPHQSDASGTLHSSSAGAFFAVSENYAQQPSSHYDGQAFHVVDGGFIDLTMGSGRAPHKRKSPGIPSVCERGSTSRYFNAGSSTDLPISSEIPQEKPCMDSQYMPWDQVTMPPNFRGSGLSIRGEGSLRNVRSRSALDFESNLARTHLSSNHSHNYSTGPPVNHATTVDLSGQSSSTLTRDWSQMGISPSHGRVLLPDTSALSHETSPFLVGSSASNASVDVGGYHHEYTTSRNPTVPVPVPQRFHNNMTQTARGVRSNLSQRSAPPFRASSSLRLGHVAPLDDGLQMVAESNSSRHPRPSTTVGWRNSERNRRSRISSDRYRPVADEVGLRDRFSSEGFMIVDRALPYGSRNMLDQHRELRMDIDNMSYEELLALGERIGHVSTGLSEDLIPKCLTETIYFSSEQSEEEGTCVICLEEYKNLDDVGTLETCGHDYHASCIRKWLFMKNQCPICKASALPDNMKDN 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0928 546 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 113 539 IPR045191 GO:0061630
Glsi11g0928 546 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 458 539 - -
Glsi11g0928 546 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 459 539 IPR013083 -
Glsi11g0928 546 MobiDBLite consensus disorder prediction 371 388 - -
Glsi11g0928 546 SUPERFAMILY RING/U-box 480 539 - -
Glsi11g0928 546 Pfam Ring finger domain 492 535 IPR001841 -
Glsi11g0928 546 MobiDBLite consensus disorder prediction 371 398 - -
Glsi11g0928 546 ProSiteProfiles Zinc finger RING-type profile. 493 535 IPR001841 -
Glsi11g0928 546 SMART ring_2 493 534 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0928 Glsi-ChrGlsi11 5818954 5821556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0928 1 545 C3H Transcription Factor Family AT2G37150 42.308 2.22e-116 353