Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0918 ATGGCCAACGACTCGTCCTTTTTGTTCTCAGGCATTCGTTTCGATAGAAAGAGGTTCGGCAACGATATTGCTAGGTTCGAGAAAAAAGAAAGCGATAATTCCCTGAAGATTTCGAGCTTGGTGGAAACTGAGAAAGCAGAACCGGTTGAAGGTAAAACGCCTGCGAAGAAGAGGAAGCGGAAGGGATCGGTTTCAGAAACGGTTGAGGGATTCAATGTCTTCAAAATATCAAAGGCAGCGGCACAGGCAGTACGTCAATCAAAAGATGAAGATAAATCTGTAATCGAGTCCGTTCAGCAGAAGAAGGAACAAAATAGGCAACTTGAGCGGGATGCTATCTTTAGGAAAACGCACAACATTCATGTGTCTGGGTACAATATCCCAACCCCGCTTCATAATTTTGATGAGTTGAGCTCAAGATATAAATGTGAATCATATTTATTACGCAATCTGGCAGAACTTGGATTCAGAGAACCAACACCAATCCAAAGGCAGGCTATTCCTGTACTTCTAAATGATCGTGAATGCTTTGCCTGTGCCCCAACCGGCTCTGGGAAAACCATGGCATTTGTGTGTCCTATGCTTATGAAGCTTAAGGATCCAGCAAAAAATGGCATTCGAGCTGTTATCCTTTGTCCCACTCGTGAATTATCTGCTCAAACATACAGAGAGTGCAAAAAGCTGGCTAAAGGAAAAAAATTTCGTATCAAGTTAATGACTAAAGAGCTTGCAAGAAATGCTGATTTTTCAAAGTTTTCATGTGATATACTTATATCCACACCACTTCGATTACGCTTGGCTATCCGGAGGAAAAAGATTGATCTTAGCAGAGTAGAGTATCTTGTCCTGGATGAATCTGACAAGCTATTTGAGCTTGGATTGTTCAAGCAGATTGATTCTATTATCAAAGCATGCTCAAATCCCTCAATAATACGCTCACTTTTCAGTGCTACTTTACCTGATTTTGTTGAGGATCGTGCTCGAGAACTTATGCATGATGCTGTTAGAGTTATTGTTGGCAGAAAGAATATGGCTTCTGAAACAATAAAGCAAAAATTAGTTTTTACTGGAAGCGAAGAAGGAAAACTTCTAGCAATTCGCCAAAGCTTTGCAGAGAGTTTAAATCCTCCAGTTTTGGTCTTTGTTCAAAGCAAGGAGCGGGCAAAGGAACTGTATGGTGAACTTTCATTTGACAACATTAGAGTTGACGTCATCCATTCTGATTTGTCTCAAAAGGAGCGAGAAAATGCAGTGGATAATTTCAGAGCTGGCAAAACATGGGTTTTGATTGCTACTGATGTAGTTGCTCGAGGCATGGATTTCAAAGGCGTGAATTGCGTGATTAACTATGATTTTCCAGATTCTGCTGCTGCCTACATCCACAGGATTGGTCGTTCTGGCAGAGCAGGGAGGACCGGGGAAGCTACAACCTTTTATTCAGAGGAAGACGTTCCGTTGTTGCGTAACATAGCTAATCTGATGGCAGCGTCTGGTTGTGAAGTTCCATCTTGGCTCATGGAGTTACCCAAAAAGAAGTGGAAGAAACACAGGCCCAAAAGAGATTCCATCTCAACAAAACCGATAGTATAA 1590 0.417 MANDSSFLFSGIRFDRKRFGNDIARFEKKESDNSLKISSLVETEKAEPVEGKTPAKKRKRKGSVSETVEGFNVFKISKAAAQAVRQSKDEDKSVIESVQQKKEQNRQLERDAIFRKTHNIHVSGYNIPTPLHNFDELSSRYKCESYLLRNLAELGFREPTPIQRQAIPVLLNDRECFACAPTGSGKTMAFVCPMLMKLKDPAKNGIRAVILCPTRELSAQTYRECKKLAKGKKFRIKLMTKELARNADFSKFSCDILISTPLRLRLAIRRKKIDLSRVEYLVLDESDKLFELGLFKQIDSIIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFVQSKERAKELYGELSFDNIRVDVIHSDLSQKERENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRTGEATTFYSEEDVPLLRNIANLMAASGCEVPSWLMELPKKKWKKHRPKRDSISTKPIV 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0918 529 SMART helicmild6 389 470 IPR001650 -
Glsi11g0918 529 Gene3D - 337 513 IPR027417 -
Glsi11g0918 529 CDD SF2_C_DEAD 349 479 - -
Glsi11g0918 529 SMART ultradead3 155 352 IPR014001 -
Glsi11g0918 529 CDD DEADc_DDX52 147 340 IPR044764 GO:0003724|GO:0005524|GO:0030490
Glsi11g0918 529 Pfam Helicase conserved C-terminal domain 367 470 IPR001650 -
Glsi11g0918 529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 490 IPR027417 -
Glsi11g0918 529 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 348 509 IPR001650 -
Glsi11g0918 529 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 92 515 - -
Glsi11g0918 529 MobiDBLite consensus disorder prediction 43 64 - -
Glsi11g0918 529 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 136 164 IPR014014 GO:0003724
Glsi11g0918 529 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 126 416 IPR014013 GO:0005524
Glsi11g0918 529 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 167 337 IPR014001 -
Glsi11g0918 529 Gene3D - 72 336 IPR027417 -
Glsi11g0918 529 MobiDBLite consensus disorder prediction 31 64 - -
Glsi11g0918 529 Pfam DEAD/DEAH box helicase 160 324 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0918 Glsi-ChrGlsi11 5754521 5759349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0918 130 508 Eukaryotic Initiation Factors Gene Family AT3G19760 30.971 1.22e-56 193