Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0914 ATGGATAAAGGCGATTTTGTGTTGTTATTATTGGACACTAATGACAGTGTTGTTATTATTGGAGAGCCCCTTACGATAATGAAATTATCTTTATCCTTTATATTTTTCAATAATTGTTATCCTGCTGATAACACCATTATCTTCAAGCCACTCGAACACTATACGCGCAGGGGAACTAAGTCGCCGAAGCCATGGGGTAATGTAACCTTGAAGACACGAGGTATGGGAGCAGCCCGCAAGCTGAGATCCCACCGCAGGAGGCAACGGTGGGCAGACAAGGCATACAAAAAATCTCACCTTGGCAATGAATGGAAGAAACCTTTTGCTGGCTCATCCCATGCGAAGGGTATTGTGCTTGAAAAGATAGGGATTGAGGCTAAACAGCCCAACTCTGCTATTCGTAAGTGTGCCAGGGTTCAACTTATTAAAAATGGGAAGAAGATTGCTGCTTTTGTCCCAAATGATGGTTGCTTAAACTACATTGAAGAGAATGACGAAGTCTTGATAGCTGGATTTGGTCGAAAAGGTCATGCCGTGGGTGATATACCTGGGGTCAGATTTAAGGTTGTGAAGGTCTCTGGTGTCTCTCTCTTGGCACTTTTCAAGGAGAAGAAGGAGAAGCCGAGGTCTTAA 633 0.436 MDKGDFVLLLLDTNDSVVIIGEPLTIMKLSLSFIFFNNCYPADNTIIFKPLEHYTRRGTKSPKPWGNVTLKTRGMGAARKLRSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0914 210 NCBIfam 30S ribosomal protein S12 74 209 IPR005680 GO:0003735|GO:0006412|GO:0015935
Glsi11g0914 210 Gene3D - 93 210 IPR012340 -
Glsi11g0914 210 SUPERFAMILY Nucleic acid-binding proteins 88 208 IPR012340 -
Glsi11g0914 210 CDD Ribosomal_S23 94 207 IPR005680 GO:0003735|GO:0006412|GO:0015935
Glsi11g0914 210 ProSitePatterns Ribosomal protein S12 signature. 127 134 IPR006032 GO:0003735|GO:0005840|GO:0006412
Glsi11g0914 210 FunFam 40S ribosomal protein S23 93 210 - -
Glsi11g0914 210 Pfam Ribosomal protein S12/S23 99 209 IPR006032 GO:0003735|GO:0005840|GO:0006412
Glsi11g0914 210 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 64 210 IPR006032 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0914 Glsi-ChrGlsi11 5730648 5733385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0914 71 210 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 95.000 5.55e-93 266