Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0910 ATGTACGGAACTGTGGCAGAGAAGCGTAGCATTGGATGTGGCTCCGCGGATCCAAGTGACTTATTGGACATACTCGGCATTTATTTTCCCCAGCAGCTGTTCACAATCGAACAAAGCTGGCTCGACCTCACATCTGCTCTCGTTTCTTTCTTTTCTTCTCCATCGGGCCAAAACCTCGCTTCGCAGGTAAAAAATCATTATGGCAGCTTTGTCTTGTCACTTGACTTCCACCAGTTCCGAAAAACATGTCATCTTGAGGATTTCTATATAATGTTGGACGGGAATCCTAAAATTGCTCTCTCATGCATGAGCTCTGCAGTTCACAAGGTTCTTATTACCAACTGGGAGAATGACAGACTGGAGGATGGTGCAAGAGTAGACATCCGTTTGCATAACTGTCCTGAAACTATGATTGCTCTGAAGAACTTAAAAGCAGCTTATATTGAGAAAAAAGGCAGTATAACAACATTTGGTGACTTGACAGACAAACTGGTCTCAGTGCGTGGTACTGTTGTGAAAGTCAGCACTGTCAGGCCTCTTGTAGTAGAAATGAGTTTTGAATGTGGAAAGTGCAAACAAAGAATTAGACGTATATTTCCTGATGGAAAATTTTCACCCCCATCAACTTGCAATTTGAATGGCTGCAAGAGCAAAATCTTTAATCCAGTGCGATCCACTGCTCAAACTATAGATTTTCAAAAAATAAGACTGCAAGAAATATTAAAACCTGAAGACCATGAAGAAGGACGAGTGCCTCGAACAGTAGAATGTGAGCTTGTCCAAGATCTTGTTGATGCGTGCATACCTGGAGACGTGGTGACTGTTACTGGAATTATAAGAGGAATTAATACTTACATGGATATCGGAGGAGGGAAGTCCAAGAACAGAAACCAAGGATTTTACTATCTGTATCTTGAAGCTGTTTCCATACAAAATTCAAAGTCACAGTCTATAACTGAGGATTTGCAAGACTCTAATCCCAAAGCAAGACCGATTGAGCTGTTTGATTTGTGCTCATTTTCTTCTAGGGACTTAGAATTTATTGTGAAATTTTCAAAGGAGCACGGTTCAGATTTATTTCGGCAAATACTTCAATCTATATGCCCATCCATCTATGGGCATGAGCTTGTTAAAGCTGGGATTACACTGGCATTATTTGGGGGTGTACGAAAGCATTCTATGGATCAGAATAAGGTTCCTGTGAGGGGAGACATTCATGTCATAATTGTTGGTGATCCTGGACTAGGTAAGAGCCAATTACTACAAGCAGCAGCAGCTGTTTCTCCACGTGGTATCTATGTCTGTGGCAATGCCACAACCAAAGCCGGCCTCACGGTAACTGTAGTGAAGGATCCTATGACCAGTGACTATGCTTTTGAGGCTGGTGCCATGGTGCTGGCTGACAGTGGATTGTGCTGCATTGACGAGTTTGATAAAATGTCAGCAGAACATCAGGCCTTACTGGAGGCAATGGAACAGCAGTGTGTCTCTATTGCAAAGGCAGGATTGGTAGCAAGTTTATCAGCTCGAACTTCTGTCTTAGCGGCGGCAAATCCAGTTGGTGGTCATTATAACCGTGCAAAGACAGTGAATGAAAATTTGAAAATGAGTGCTGCTTTACTGTCCCGATTTGATTTAGTGTTTATACTGTTGGACAAACCTGATGAACTTCTGGACAAGCGAGTCTCAGAGCACATCATGTCAGTAAGTTATTCTACTTTGTCGCTTTTCAACCTGCTTGTAGGTAAATTACATGCTGCTCATATCTCATCCTTGGTTGATGTGAATGGCACCTATGCATCCAATCCTATGTTTGTACGTCTTTCTGTTGGCAAAGATGAATGGTTCAAATGTATCTTGCAGCTTCATGCTGGGTATGGACAGCACTCACCAGCAGTTAAAAAGCAACGAGGAGACCTATCTTCTGATTCAAGAATTGCTGTACCACATAATGCTGAAGGCGTAGATTTGGGTGTTAAATCTGGTTCTTTAGTTTCAAGGTTGAGACTTGACCCACAAAGAGATGGTGATTTCGTTCCTTTGCCTATTCAACTTCTTCGCAAATACATTGCTTATGCAAGGAGTTTTGTCTTTCCTAGGATGTCCAAGCCGGCAGCGGAAATCCTACAAAAGTTTTACCTTAAATTGAGAGATCATAATACTTCAGCTGATAGTACACCGATAACAGCAAGGCAACTAGAAAGTCTAGTGAGGCTGGCTGAAGCTCGAGCACGGCTAGACTTGAGAGAAGAAATAACAGCCCAGGATGCGATGGATGTCGTTGAAATAATGAAGGAATCCCTGTATGATAAATACGTTGATGAGCATGGTTTAGTGGATTTTGGTCGAAGCGGGGGGATGAGTCAACAGAAAGAGGCGAAACGCTTCTTAAGTGCCCTCAATAAACAATCAGAATTACAGCAGAAAGATTGCTTTTCAATATCTGAAATATATAGTCTGGCAGATAGGATCGGCCTACAAGTTCCTGATATTGACACTTTTATCGATAATTTAAACAGCGTTGGTTATCTACTCAAAAAGGGACCAAAGACATACCAGGTGTTATCCTCCTCTTACACACGAAGCCAATCATCTAGGACAAAGGGTTAA 2610 0.4203 MYGTVAEKRSIGCGSADPSDLLDILGIYFPQQLFTIEQSWLDLTSALVSFFSSPSGQNLASQVKNHYGSFVLSLDFHQFRKTCHLEDFYIMLDGNPKIALSCMSSAVHKVLITNWENDRLEDGARVDIRLHNCPETMIALKNLKAAYIEKKGSITTFGDLTDKLVSVRGTVVKVSTVRPLVVEMSFECGKCKQRIRRIFPDGKFSPPSTCNLNGCKSKIFNPVRSTAQTIDFQKIRLQEILKPEDHEEGRVPRTVECELVQDLVDACIPGDVVTVTGIIRGINTYMDIGGGKSKNRNQGFYYLYLEAVSIQNSKSQSITEDLQDSNPKARPIELFDLCSFSSRDLEFIVKFSKEHGSDLFRQILQSICPSIYGHELVKAGITLALFGGVRKHSMDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVTVVKDPMTSDYAFEAGAMVLADSGLCCIDEFDKMSAEHQALLEAMEQQCVSIAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSVSYSTLSLFNLLVGKLHAAHISSLVDVNGTYASNPMFVRLSVGKDEWFKCILQLHAGYGQHSPAVKKQRGDLSSDSRIAVPHNAEGVDLGVKSGSLVSRLRLDPQRDGDFVPLPIQLLRKYIAYARSFVFPRMSKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARARLDLREEITAQDAMDVVEIMKESLYDKYVDEHGLVDFGRSGGMSQQKEAKRFLSALNKQSELQQKDCFSISEIYSLADRIGLQVPDIDTFIDNLNSVGYLLKKGPKTYQVLSSSYTRSQSSRTKG 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0910 869 Gene3D - 338 777 IPR027417 -
Glsi11g0910 869 FunFam DNA helicase MCM8 isoform X1 180 231 - -
Glsi11g0910 869 Pfam MCM P-loop domain 356 569 IPR001208 GO:0003677|GO:0005524|GO:0032508
Glsi11g0910 869 PRINTS Mini-chromosome maintenance (MCM) protein family signature 402 417 IPR001208 GO:0003677|GO:0005524|GO:0032508
Glsi11g0910 869 PRINTS Mini-chromosome maintenance (MCM) protein family signature 513 525 IPR001208 GO:0003677|GO:0005524|GO:0032508
Glsi11g0910 869 PRINTS Mini-chromosome maintenance (MCM) protein family signature 540 548 IPR001208 GO:0003677|GO:0005524|GO:0032508
Glsi11g0910 869 PRINTS Mini-chromosome maintenance (MCM) protein family signature 462 476 IPR001208 GO:0003677|GO:0005524|GO:0032508
Glsi11g0910 869 PRINTS Mini-chromosome maintenance (MCM) protein family signature 489 502 IPR001208 GO:0003677|GO:0005524|GO:0032508
Glsi11g0910 869 CDD MCM8 363 767 - -
Glsi11g0910 869 SMART mcm 153 769 IPR031327 GO:0003677|GO:0005524|GO:0032508
Glsi11g0910 869 Coils Coil 474 494 - -
Glsi11g0910 869 SMART AAA_5 403 555 IPR003593 GO:0016887
Glsi11g0910 869 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 774 IPR027417 -
Glsi11g0910 869 CDD MCM8_WHD 790 855 - -
Glsi11g0910 869 Gene3D - 180 230 - -
Glsi11g0910 869 Pfam MCM OB domain 161 281 IPR033762 -
Glsi11g0910 869 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 62 805 IPR031327 GO:0003677|GO:0005524|GO:0032508
Glsi11g0910 869 Pfam MCM AAA-lid domain 685 768 IPR041562 -
Glsi11g0910 869 SUPERFAMILY Nucleic acid-binding proteins 66 283 IPR012340 -
Glsi11g0910 869 Gene3D - 161 282 IPR012340 -
Glsi11g0910 869 ProSiteProfiles MCM family domain profile. 359 566 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0910 Glsi-ChrGlsi11 5713668 5720434 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0910 3 855 Core DNA Replication Machinery Family AT3G09660 66.316 0.0 1132