Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0908 ATGCCAGGTGCATTTTCTTCTATGCGCTTCCTTTGTTTTGCTTACCTCGAGTTCTTTTTAGTCGCTTCTCTTCAATTGGTTTGTCTCAAGATTGAAGCTTCTCTGCTCTGGCACCGATATTTGCATCATAAAAATGGTTTCGTAAGTTTGGACTGTGGAGGGAAAGAAAATTTCACTGACGAACTTGGCCTCGATTGGATAACTGATGATAAACTTACTTATGGAGAATCAAGCACTGCATCAGTTGCAAGCGAGACACGGAAGCAATATATGACGCTACGACACTTTCCTGCTGATTCCAGGAAATACTGCTACACGCTTAATGTTGTCAGTAGGACAAGGTACCTACTGAGGGCATCATTCTTGTATGGGAACTTTGATGATAATAATGTTTATCCAAAATTTGATATTTCCTTCGGGGCTACTTATTGGTCTACCATTGTTATATCTGATGCTAATACTATAGAGATGCGAGAACTTATATTTCTAGCTTCAGCTTCTACCGTTAGTGTATGTTTATCAAATGCAACAACCGGACAACCATTCATATCTACGCTGGAACTCCGGCAATTCAATGGTTCAGTTTATTATACAGAATATGAGGAACAGTTTTACCTTAGTGTCTCTGCTAGAATAAATTTTGGTGCACAGAGCGATGCTCCAATCAGGTATCCTGATGACCCTTTTGATAGAATTTGGCAGTCAGATTCTTTAAAAAAAGAAAACTATCTTGTGGATGTTGCTGATGGAACCAAGAAAGTTTCTACCAAAGTACCAATTGATGTTAACAGAGATGAAATGCCACCAGTGAAAATGATGCAGACAGCTGTCGTGGGTACAAATGGATCTCTAACTTACCGATTGAACTTGGATGGCTTTCCTGGAATTGGTTGGGGAGTCACCTATTTCGCAGAGATTGAAAATTTGGGTTCAAATGAATCCAGAAAATTCAGACTAGTACTTTCAGGCCAGCCTGATATCAGCAAGGCTATTGTTAATATTGAAGAAAATGCTCAAGGCAGATATCGCCTTTATGAACCAGGATATACCAATTTATCCCTACCATTTGTGCTATCTTTTCGATTTGACAAGACAATTGATTCTACCAGGGGGCCTCTTTTGAATGCCATGGAGATAAATAAGTATCTGGAGAAAAATGATGGCTCTCTAGATGGAGACGCTATTTCTAGTGTACTTTCACACTACTCTTTAGCTGACTGGGCACAAGAAGGAGGTGACCCATGTCTGCCAGTTCCATGTTCGTTGTCTAATAAAAACTTGACTGGAAATATTCCTTCAGACATCACCAAATTGACTGGTCTGGCTGAACTATGGCTTGATGGAAATACGTTAACTGGCCCAATACCTGATTTTACTGGGTGCAAGGACTTGAAGATCATTCATCTTGAGAACAATCAATTGACTGATGATCTACCTTACTCTTTGGTAAACCTCCCAAATTTGAGGGAACTATATGTGCAGAATAATATGTTATCTGGAACGGTGCCGTCAGGTCTTCTGAGCAAAGATCTGATTTTGAACTACTCTGGAAACATTCATCTTCATAAAGGAAGCAGGAAAAAGAGCCACATGTTTATTATTATTTGTTCATCTGTTGGGGCTGCTGTTATACTTTTAGCTTGCCTGTTTCTGTGCAAAGGAAAGAGGAGAAATTATGAACAAGACGACCGTGGTCCCCTCCTTACTCGGAGGATGGCTGCTGCCAAGGGCGATGCTCCTGCAGAAGTGGCAGAAGCTGCTCACTGCTTCAGTTTTTCTGAAATTGAAAATGCCACAAGTAATTTTGAAAAGAAAATTGGTTCTGGAGGTTTTGGAGACGTATACTATGGAAAACTGAAAGATGGAAAAGAGATTGCTGTTAAAGTTCTAAACGGTAATTCCCATCAGGGAATGCGAGAGTTCTCTAATGAGGTAACTCTTCTTTCAAGGATACATCACAGAAACTTGGTACAGCTTCTTGGTTATTGCCGAGAGGAAGGGAACAGTATGCTTGTTTATGAGTTCATGCATAATGGAACTGTCAAGGAACATATTTATGGCCCATTAACACATGGACGGAGGATCAATTGGATTAAGCGCCTTAAGATTGCAGAAGATGCTGCTAAAGAATTGGTATCTGGCCAAGAAGCTATCTCGAATGAAAGCTTTGGTGCTAAATGCCGAAACATTGTCCAGTGGGCAAAATTACACGTGGAGAGTGGAAATATACAAGGTATCATTGATCCCTCTTTAGGTCATGATTATGACCTTCAATCCATGTGGAAAATAGCAGAGAAAGCATTGATGTGCGTTCAACCTCGGGGACATAAGAGGCCATCAATTTCAGAAGTTGTGAAAGCGATCCAAGATGCAATCTCTATTGAGAGAGTGGCCCAAACAGCAAGACAAGGGAATTCCCATGAGATGGTTCCGGCGACTATGGCTGAAGCTCCGGCTAGTCCAGGCGGCGGTAGCCTCGAGAGCGGTGATCAGAGCCCCCGCTCTAATGTCCGAGAGCAGGACAGGTACCTTCCCATTGCCAATATCAGCCGGATTATGAAGAAGGCGCTTCCTGCTAATGGAAAAATTGCCAAGGATGCCAAGGAGACTGTGCAGGAATGCGTTTCAGAGTTCATCAGCTTCATCACCAGCGAGGCGAGTGATAAGTGTCAGAGAGAGAAGAGGAAGACAATCAACGGCGACGATTTACTTTGGGCTATGGCAACTCTAGGTTTTGAGGATTATATTGATCCCCTGAAGATTTACCTGGCCAGATACCGAGAGGGTGATACCAAGAGTTCTGCAAAAGGTGGAGATGCATCTACTAAGAAAGATGTTCAACCAAGTCCTAATGCTCAGCTTACCCATCAAGGTTCTTTTTCACAAGGTGTTAACTACACAAATTCTCAGACTCAACATATGATGGTTCCTATGCAAGGCCCAGAGTAG 2949 0.4198 MPGAFSSMRFLCFAYLEFFLVASLQLVCLKIEASLLWHRYLHHKNGFVSLDCGGKENFTDELGLDWITDDKLTYGESSTASVASETRKQYMTLRHFPADSRKYCYTLNVVSRTRYLLRASFLYGNFDDNNVYPKFDISFGATYWSTIVISDANTIEMRELIFLASASTVSVCLSNATTGQPFISTLELRQFNGSVYYTEYEEQFYLSVSARINFGAQSDAPIRYPDDPFDRIWQSDSLKKENYLVDVADGTKKVSTKVPIDVNRDEMPPVKMMQTAVVGTNGSLTYRLNLDGFPGIGWGVTYFAEIENLGSNESRKFRLVLSGQPDISKAIVNIEENAQGRYRLYEPGYTNLSLPFVLSFRFDKTIDSTRGPLLNAMEINKYLEKNDGSLDGDAISSVLSHYSLADWAQEGGDPCLPVPCSLSNKNLTGNIPSDITKLTGLAELWLDGNTLTGPIPDFTGCKDLKIIHLENNQLTDDLPYSLVNLPNLRELYVQNNMLSGTVPSGLLSKDLILNYSGNIHLHKGSRKKSHMFIIICSSVGAAVILLACLFLCKGKRRNYEQDDRGPLLTRRMAAAKGDAPAEVAEAAHCFSFSEIENATSNFEKKIGSGGFGDVYYGKLKDGKEIAVKVLNGNSHQGMREFSNEVTLLSRIHHRNLVQLLGYCREEGNSMLVYEFMHNGTVKEHIYGPLTHGRRINWIKRLKIAEDAAKELVSGQEAISNESFGAKCRNIVQWAKLHVESGNIQGIIDPSLGHDYDLQSMWKIAEKALMCVQPRGHKRPSISEVVKAIQDAISIERVAQTARQGNSHEMVPATMAEAPASPGGGSLESGDQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLARYREGDTKSSAKGGDASTKKDVQPSPNAQLTHQGSFSQGVNYTNSQTQHMMVPMQGPE 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0908 982 MobiDBLite consensus disorder prediction 815 840 - -
Glsi11g0908 982 PRINTS CCAAT-binding transcription factor subunit A signature 890 908 - -
Glsi11g0908 982 PRINTS CCAAT-binding transcription factor subunit A signature 871 889 - -
Glsi11g0908 982 PRINTS CCAAT-binding transcription factor subunit A signature 909 927 - -
Glsi11g0908 982 SUPERFAMILY Histone-fold 840 941 IPR009072 GO:0046982
Glsi11g0908 982 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 419 502 - -
Glsi11g0908 982 SUPERFAMILY Protein kinase-like (PK-like) 586 709 IPR011009 -
Glsi11g0908 982 FunFam Leucine-rich repeat receptor-like protein kinase 578 675 - -
Glsi11g0908 982 Gene3D Transferase(Phosphotransferase) domain 1 711 808 - -
Glsi11g0908 982 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 843 907 IPR003958 -
Glsi11g0908 982 ProSitePatterns Protein kinases ATP-binding region signature. 606 628 IPR017441 GO:0005524
Glsi11g0908 982 FunFam Nuclear transcription factor Y subunit B-3 832 956 - -
Glsi11g0908 982 ProSitePatterns NF-YB/HAP3 subunit signature. 874 890 IPR003956 GO:0005634|GO:0006355|GO:0043565
Glsi11g0908 982 Gene3D Histone, subunit A 831 970 IPR009072 GO:0046982
Glsi11g0908 982 MobiDBLite consensus disorder prediction 944 969 - -
Glsi11g0908 982 ProSiteProfiles Protein kinase domain profile. 600 982 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g0908 982 Pfam Protein tyrosine and serine/threonine kinase 602 708 IPR001245 GO:0004672|GO:0006468
Glsi11g0908 982 PANTHER OS07G0107800 PROTEIN-RELATED 710 792 - -
Glsi11g0908 982 Pfam Leucine rich repeat 441 498 IPR001611 GO:0005515
Glsi11g0908 982 SUPERFAMILY L domain-like 421 508 - -
Glsi11g0908 982 Gene3D Ribonuclease Inhibitor 397 519 IPR032675 -
Glsi11g0908 982 Gene3D Transferase(Phosphotransferase) domain 1 581 710 - -
Glsi11g0908 982 MobiDBLite consensus disorder prediction 931 969 - -
Glsi11g0908 982 Pfam Malectin-like domain 50 380 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0908 Glsi-ChrGlsi11 5699249 5709458 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0908 46 709 Receptor kinase-like Gene Family AT2G37050 64.740 0.0 912
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Glsi11g0908 Malectin_like 7e-75 CL0202
TF NF-YB Glsi11g0908 Malectin_like 7e-75 CL0202