Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0906 ATGTTGGATCTTAATCTCAGCGTGGGTTCCTCCGATTCTGCATCAGATTCCGTCGACGTGGTCTCTGGAAAAATTCCACCACTTTCTGTTTGCCAAATGGATAGCTCTGGAAGCTTTACTTCCTCCGTCGCCAATGCGGATGCCTCCACCAATACTTGTGACGATGATTCTTGCTCTTATGGCAATGCCTTTGCTCATAACTTTGGTATACTGAAGAAGAACGCCATAGATGATGGCACAAGCTCCAAAGCAGTTGAAATTCCCACGGCCCAAGGAGAAGCTGTCTGTCTTCGGACCATCCAGCTTTTTCCGGCGGCCGGAGCGGGAGATATCCATTCGACTGAGTTGGAAATCGGTCAGCGGTTTCCGGGTTCGTCTTCAACGAAGCGTTGGTTGGATTTCTCACGGAAGGGGATGGGTTACAGTGGAGAGCCAGAGCTGAAGAAGCTCCCCCAGCTGCAGCAGAGACAGCAGGTCAAGAAGAGCCGACGGGGACCGAGGTCGCGGAGCTCGCAGTATCGTGGCGTTACTTTCTATCGAAGAACGGGAAGATGGGAATCGCATATTTGGGATTGTGGGAAACAAGTGTACTTGGGCGGATTTGATACAGCGCATGCTGCAGCAAGGGCATATGATCGAGCTGCAATCAAGTTTCGTGGCGTTGACGCTGATATCAATTTCAACATCCGTGATTATGATGACGATATAAAGCAGATGAGTAATTTCACAAAAGAAGAGTATGTGCATATTTTGCGTCGACAGAGCACTGGTTTTTCAAGGGGAAGCTCAAAATACAGGGGAGTTACTCTGCATAAATGTGGGCGATGGGAAGCTCGGATGGGACAGCTTCTTGGGAAAAAGTATATATATCTTGGGCTATTCGATAGCGAAACAGAGGCTGCAAGGGCTTATGATAAGGCTGCTATAAGATGCAATGGAAGGGAAGCTGTTACAAATTTTGAGCCCAGCTCATACCAAGGGGAGATAATTTCTCATGCTTATAATTTTAATGATAACAACAAAAATCTTGATCTCAACTTGGGCATAGCTCCTCCTCCTTTCTCTGATAGTCAAATGGAGAAAATATACAACGTGAGTGGTTTCCAAGTTCAGCGTGGCTGGGAAGACAAGCCTGTTGATGGGAGAGTTAAGTTTGAGCTCTCTGCATCAAGATTATCGAAGGCTCAGGCTCAGGCTCAGCCGTCCCATGGCTTCTCTGCAGCATACGAGCGTCCCTCTGTCAGGAGCGGTACCGATTTCTTTTCCATTTGCAAGGAAAAAGCAATAGAGAAGAAAATGGAAGTTGATCCGTTGTCCAATTGGTTATGGAATATCCAAGGTCCTTATGGCGGTGCAACTCTGATTCCACCCTTCTCTGCTGCAGCATCATCAGGATTCCCTTCGGCAATGATATCTTCAGCTGCTGATAGTCAAATTCTTTTGCCAAACATGACGATCCTCCCCCCTCATTATCCTACCTCGATCACTAACTCCAGCACCATATCCCCTTTCTACTGCACAAGCTGA 1527 0.4735 MLDLNLSVGSSDSASDSVDVVSGKIPPLSVCQMDSSGSFTSSVANADASTNTCDDDSCSYGNAFAHNFGILKKNAIDDGTSSKAVEIPTAQGEAVCLRTIQLFPAAGAGDIHSTELEIGQRFPGSSSTKRWLDFSRKGMGYSGEPELKKLPQLQQRQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNIRDYDDDIKQMSNFTKEEYVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYIYLGLFDSETEAARAYDKAAIRCNGREAVTNFEPSSYQGEIISHAYNFNDNNKNLDLNLGIAPPPFSDSQMEKIYNVSGFQVQRGWEDKPVDGRVKFELSASRLSKAQAQAQPSHGFSAAYERPSVRSGTDFFSICKEKAIEKKMEVDPLSNWLWNIQGPYGGATLIPPFSAAASSGFPSAMISSAADSQILLPNMTILPPHYPTSITNSSTISPFYCTS 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0906 508 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 136 355 - -
Glsi11g0906 508 ProSiteProfiles AP2/ERF domain profile. 172 228 IPR001471 GO:0003700|GO:0006355
Glsi11g0906 508 CDD AP2 263 323 IPR001471 GO:0003700|GO:0006355
Glsi11g0906 508 SUPERFAMILY DNA-binding domain 171 229 IPR016177 GO:0003677
Glsi11g0906 508 SUPERFAMILY DNA-binding domain 263 322 IPR016177 GO:0003677
Glsi11g0906 508 ProSiteProfiles AP2/ERF domain profile. 264 321 IPR001471 GO:0003700|GO:0006355
Glsi11g0906 508 SMART rav1_2 172 234 IPR001471 GO:0003700|GO:0006355
Glsi11g0906 508 SMART rav1_2 264 327 IPR001471 GO:0003700|GO:0006355
Glsi11g0906 508 CDD AP2 172 229 IPR001471 GO:0003700|GO:0006355
Glsi11g0906 508 MobiDBLite consensus disorder prediction 152 173 - -
Glsi11g0906 508 Gene3D AP2/ERF domain 263 322 IPR036955 GO:0003700|GO:0006355
Glsi11g0906 508 Gene3D AP2/ERF domain 171 230 IPR036955 GO:0003700|GO:0006355
Glsi11g0906 508 Pfam AP2 domain 172 220 IPR001471 GO:0003700|GO:0006355
Glsi11g0906 508 Pfam AP2 domain 263 312 IPR001471 GO:0003700|GO:0006355
Glsi11g0906 508 FunFam AP2-like ethylene-responsive transcription factor 171 230 - -
Glsi11g0906 508 PRINTS Ethylene responsive element binding protein signature 303 323 IPR001471 GO:0003700|GO:0006355
Glsi11g0906 508 PRINTS Ethylene responsive element binding protein signature 265 276 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0906 Glsi-ChrGlsi11 5685833 5688518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0906 157 348 AP2-EREBP Transcription Factor Family AT4G36920 80.928 2.39e-93 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Glsi11g0906 AP2 4.1e-09 CL0081