Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0904 ATGATTGAAATCGGTGTAGTTGTCAAATTCTGCACCGCACATATACGCAGAGCAGACGCGCGAGTCATCGTGTCTGTATGCTTTCTCCACAGCATGAACTCCAACACTTCCAATTCTCAACCAATGGTGAACTCAACGCCCACAGATGGGTCTGGCAAGAAGGTGAGAAAGCCCTATACCATTACCAAGTCAAGGGAGAGCTGGACTGAGGAAGAGCACGACAAGTTTCTCGAAGCTCTTCAGCTATTTGACAGAGATTGGAAGAAAATTGAAGACTTTGTAGGTTCAAAGACGGTTATTCAGATTCGAAGCCATGCGCAAAAATACTTCCTAAAAGTTCAAAAGAATGGGACAATAGCACACGTGCCTCCTCCTCGCCCTAAGCGCAAAGCCGCTCATCCTTATCCACAAAAGGCATCAAAGAATGTTTTGGTTCCATTGCCAGCATCAATGGCTTATGTTTCTTCAACAAATATCCTTGCACCTGGGTATGCCACCTGGGATGAAACTTCCATGCTGATCAACCCTGGATCGAACCAATACATGCCCTCTCAGGATGAACTCACCACCCTTCATGGAAATGAAGCTGATATGGGATCAAAGGAGATAGCAAGGGTTAGTAACAGCAGTCTTGGTGGTGTTGGAAACTCTACTAGAATGCTACCAAGTTCTGAGATTCCAAAGCAAGGGAAACAAGCTCCAATGCTTCATGGTTTACCAGACTTCGCTGAGGTTTACAGCTTTATTGGAAGTGTTTTTGATCCGGATACAGAAGGTCACATCCAGAAGCTGAAGGAAATGGACCCTATAAATTTTGAAACTGTTTTGTTGTTAATGAAAAACCTCAGTGTCAACTTGTCTAGCCCTCACTTTGAGCCCTTTAGGAACGTCTTGAAACATCGTGTGAAACCGCTTAATTACCTGTTGTTAGCTGCGTTTTCTCAGCGGAAGTGA 954 0.4444 MIEIGVVVKFCTAHIRRADARVIVSVCFLHSMNSNTSNSQPMVNSTPTDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHVPPPRPKRKAAHPYPQKASKNVLVPLPASMAYVSSTNILAPGYATWDETSMLINPGSNQYMPSQDELTTLHGNEADMGSKEIARVSNSSLGGVGNSTRMLPSSEIPKQGKQAPMLHGLPDFAEVYSFIGSVFDPDTEGHIQKLKEMDPINFETVLLLMKNLSVNLSSPHFEPFRNVLKHRVKPLNYLLLAAFSQRK 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0904 317 MobiDBLite consensus disorder prediction 37 51 - -
Glsi11g0904 317 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Glsi11g0904 317 PANTHER SWI/SNF COMPLEX-RELATED 38 287 - -
Glsi11g0904 317 SUPERFAMILY Homeodomain-like 59 115 IPR009057 -
Glsi11g0904 317 Gene3D - 68 115 - -
Glsi11g0904 317 ProSiteProfiles SANT domain profile. 63 116 IPR017884 -
Glsi11g0904 317 NCBIfam myb-like DNA-binding domain, SHAQKYF class 63 112 IPR006447 GO:0003677
Glsi11g0904 317 CDD SANT 67 110 IPR001005 -
Glsi11g0904 317 SMART sant 64 112 IPR001005 -
Glsi11g0904 317 MobiDBLite consensus disorder prediction 37 57 - -
Glsi11g0904 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 114 IPR017930 -
Glsi11g0904 317 FunFam protein REVEILLE 6 isoform X1 67 115 - -
Glsi11g0904 317 Pfam Myb-like DNA-binding domain 65 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0904 Glsi-ChrGlsi11 5672256 5676012 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi11g0904 Myb_DNA-binding 4.8e-12 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0904 11 5672256 5676012 Glsi11g0904 11 5672256 5676012 ECH