Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0901 ATGCCTCCTAAGCAGCAATCAAAAACCGATTTAGCGAAGAAACAGAAGACCGTAGAGGATAAGACCTTCGGTCTCAAAAACAAAAACAAGAGCAAAAATGTTCAGAAATATGTCCAAAGCCTCAAGCAGTCCGTACAACCCAAGCCTGATCCTTCCAAAGTCACTGCCAAGAAAAAGAAGGAGGAAGAAAAGGCCAAGGATAAGGAGTTAAATGATTTGTTCAAAATCGCTGTTAGTCAGCCTAAAGTGCCAGTTGGTGTTGATCCCAAGTCCATATTATGTGAGTATTTTAAAGTGGGACAGTGTACCAAGGGCTTTAAATGCAAGTTCTCACATGATTTGAATGTTCAAAGGAAAGGGGAAAAGATTGATATTTACAACGATAAGCGCGACCAGGAAACTATGGAGGATTGGGACCAGGAGACCTTGGAGAAGGTGGTGGAGTCAAAGAAAACCGAGTATAATCAGAACAAACCAACTGATATAGTCTGTAAATACTTTTTGGAAGCAGTGGAGAAGAAGCAATATGGTTGGTTTTGGGTTTGCCCGAATGGTGGTCAGAACTGCCACTATAGGCACGCCCTTCCCCCTGGATATATTTTAAAATCTCAAATGAAGGCTCTGTTAGAGGAAGAAACCGAAAAATTATCAATTGAGGAGGAGATTGAAAATCAGCGTGCGAAAGTGACAACTTCAACTCCGATGACTCCTGAATTATTCATGCTATGGAAGAAGAAGAAGATAAATGATAGAGATGCCAATTTGGCTGCACAACAGGCAGAGAGAGCTAAAAATGACCGCATGAGTGGTCGCGAGCTATTTTTGTCAGATGCTAGCTTGTTTGTGGATGATGCTGGGGCATATGTCATGTACCAAAGAGAACCAGAATCTGATGACACTGAAAAGGTTACTTTTCTCTTCATGTATGCGGATGGCAATGCTGCTGAAGGTGGTCCAAGCACTTCAACAACTGTTGCAGAACCTCCTGATGATGATGACGATGATGATGATGAACTGGACATGGACGAGTTGAATGAACTAGAAGCAAGCTTATCAAAGACATCAATCCAAACAAAGGAACCAGGAGCTGAAGCTTAA 1098 0.4199 MPPKQQSKTDLAKKQKTVEDKTFGLKNKNKSKNVQKYVQSLKQSVQPKPDPSKVTAKKKKEEEKAKDKELNDLFKIAVSQPKVPVGVDPKSILCEYFKVGQCTKGFKCKFSHDLNVQRKGEKIDIYNDKRDQETMEDWDQETLEKVVESKKTEYNQNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGQNCHYRHALPPGYILKSQMKALLEEETEKLSIEEEIENQRAKVTTSTPMTPELFMLWKKKKINDRDANLAAQQAERAKNDRMSGRELFLSDASLFVDDAGAYVMYQREPESDDTEKVTFLFMYADGNAAEGGPSTSTTVAEPPDDDDDDDDELDMDELNELEASLSKTSIQTKEPGAEA 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0901 365 ProSiteProfiles Zinc finger C3H1-type profile. 158 196 IPR000571 GO:0046872
Glsi11g0901 365 MobiDBLite consensus disorder prediction 313 343 - -
Glsi11g0901 365 Gene3D - 87 204 - -
Glsi11g0901 365 MobiDBLite consensus disorder prediction 39 64 - -
Glsi11g0901 365 MobiDBLite consensus disorder prediction 327 343 - -
Glsi11g0901 365 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 363 - -
Glsi11g0901 365 Gene3D - 205 279 - -
Glsi11g0901 365 MobiDBLite consensus disorder prediction 1 26 - -
Glsi11g0901 365 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Glsi11g0901 365 SMART c3hfinal6 158 195 IPR000571 GO:0046872
Glsi11g0901 365 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Glsi11g0901 365 Coils Coil 208 228 - -
Glsi11g0901 365 Pfam DRG Family Regulatory Proteins, Tma46 215 289 IPR032378 -
Glsi11g0901 365 MobiDBLite consensus disorder prediction 9 26 - -
Glsi11g0901 365 SUPERFAMILY CCCH zinc finger 88 113 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0901 Glsi-ChrGlsi11 5662472 5665588 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi11g0901 DFRP_C 7.5e-17 No_clan