Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0896 ATGGGTTGGATTCCCTGTTCTGGAAATTCAAGCACTGAGAAAAAGATAGAGAGAAAAAAGAAGAAGATGGAAGTGCAGGAGACCCTGGTTGATCAAATCAAACCCGCTCCAGGGAAGTTGAAGAGGAGCTCATCAACGAATTCCAAAGATACCTCTAAAAATGGGAATTCTGATCATATTGCAGCACAGACCTTCACATTCCGTGAGTTGGCAATTGCAACTAGAAATTTTAGGACAGAATGTCTTTTGGGTGAGGGAGGTTTTGGTAGAGTATACAAAGGGCGTTTGGAAAGTGCTAATCAGGTTGTCGCTATTAAGCAGCTTGACCGAAATGGGCTGCAAGGGAATAGAGAATTCCTAGTTGAAGTGTTGATGTTAAGTCTACTTCACCACCCTAACCTCGTCAACCTTATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATATATGCCATTAGGATCCTTGGAAGACCACTTACATGATATTTCTCCTGGCAAAAAACGACTTGACTGGAACACACGAATGAAAGTAGCTGCCGGGGCTGCGAGCGGATTGGAATATCTACATGACAAAGCTAACCCTCCTGTCATATACCGAGATTTAAAGTGCTCAAACATTTTGCTTGGGAAAGGCTATAATCCTAAGTTATCTGATTTTGGTTTGGCTAAACTTGGACCTGTTGGAGAAAATACCCATGTTTCAACAAGGGTTATGGGTACATATGGATATTGTGCTCCAGAGTATGCAATGACAGGTCAACTGACTGTGAAATCAGATGTTTATAGCTTTGGCATCGTTCTTTTGGAAATAATTACTGGAAGGAAAGCCATTGACGACTCAAAAGCTGCAGGAGAGCAGAATCTTGTTGCATGGGCTAGACCCTTATTTAAAGATCGAAGACAATTTTCACAAATGGCTGATCCAATGCTCCAAGGTCAGTATCCTCCAAGAGGCTTATATCAGGCCCTTGCTGTTGCAGCAATGTGTGTTCAGGAGCAAGCTAATATGCGCCCAGTTATGGCTGATGTTGTCACTGCTTTGACTTACCTTGCTTCCCAAAGATATGATCCCACACAAACTCTTCAAAGCTCTCGCCTTCCCCCTGCTACTCCTACAGCCAAGAGGGGGCGATGA 1146 0.4311 MGWIPCSGNSSTEKKIERKKKKMEVQETLVDQIKPAPGKLKRSSSTNSKDTSKNGNSDHIAAQTFTFRELAIATRNFRTECLLGEGGFGRVYKGRLESANQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDISPGKKRLDWNTRMKVAAGAASGLEYLHDKANPPVIYRDLKCSNILLGKGYNPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGIVLLEIITGRKAIDDSKAAGEQNLVAWARPLFKDRRQFSQMADPMLQGQYPPRGLYQALAVAAMCVQEQANMRPVMADVVTALTYLASQRYDPTQTLQSSRLPPATPTAKRGR 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0896 381 SUPERFAMILY Protein kinase-like (PK-like) 59 351 IPR011009 -
Glsi11g0896 381 MobiDBLite consensus disorder prediction 12 28 - -
Glsi11g0896 381 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Glsi11g0896 381 MobiDBLite consensus disorder prediction 39 57 - -
Glsi11g0896 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Glsi11g0896 381 PANTHER OS07G0668900 PROTEIN 22 363 - -
Glsi11g0896 381 Pfam Protein tyrosine and serine/threonine kinase 81 350 IPR001245 GO:0004672|GO:0006468
Glsi11g0896 381 Gene3D Transferase(Phosphotransferase) domain 1 154 369 - -
Glsi11g0896 381 CDD STKc_IRAK 83 352 - -
Glsi11g0896 381 FunFam Serine/threonine-protein kinase PBS1 154 369 - -
Glsi11g0896 381 ProSiteProfiles Protein kinase domain profile. 77 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g0896 381 MobiDBLite consensus disorder prediction 1 57 - -
Glsi11g0896 381 Gene3D Phosphorylase Kinase; domain 1 46 153 - -
Glsi11g0896 381 SMART serkin_6 77 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g0896 381 FunFam Serine/threonine-protein kinase PBS1 49 153 - -
Glsi11g0896 381 MobiDBLite consensus disorder prediction 362 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0896 Glsi-ChrGlsi11 5635949 5638299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0896 31 356 Glycoside Hydrolase AT3G07070 66.871 1.25e-165 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Glsi11g0896 PK_Tyr_Ser-Thr 2.3e-46 CL0016