Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0888 ATGGAAGAATTTTCAACCATCATGGCTGCACTCTCCACCCTCACTCCTTCTCACCTCTCGCATCTCGTCCATTCCATTTTCTCTCTCTCCCTCCACCACCATCGCCGCCTCTCCTCCCTCCTCTCTTCCCCTCCTCTTTTTTCCCTAACCTTTCGTTATCTCCAATCTCTCTCTCTTCCCCAAAAGACCCTTCTCATTGCCCGCCACCTCCTCTCCTCTCTGCAACCCCTCACACGCCACCTCAACACTACATCGCCCTTGTCCACCGCCCTCACACAGCGTGATCTGGACGCTGTTCTGCTACTCCTCTTATTCTGCGAAACCCACCAGCACAACCCAGAAACTCTCGAGGCAGCAAGTTCCGACTGGCGGCAAAACTTGAGCAAACTCTTCCGGGATAGATGGCTGACACTTTCTTGTTCTGGCATAGGGGCATGTACTTGGACAGTTTTGATTCCTTACGTTGAGACGATGAGCCGGAGCCGGAAGCTTGTGGGTGCAATGGGTTGGGGCGGGAAGGAAGTGGGCGAGGTGGCGGCGTCGGCAGCGGCGGTGGTGGGTCTTCCGGCGGTGGAGGTGAAGGTGGGTGGAAGGGAGTGCGTGATATGTAAAGAGGAGATGGGAATAGGGAGGGATGTATGCGAGTTGCCATGTAAGCACTTGTTTCATTGGATGTGTATATTACCCTGGCTCAGGAAGAGGAACACCTGTCCCTGCTGTCGATTCCGGCTGCCGTCCGATGATGTGTTCGGAGAGATCCAACGGCTCTGGGAAGTCTTAGTTAAAATGGGTGGCAGAGAGTTACTTGATTGA 813 0.5424 MEEFSTIMAALSTLTPSHLSHLVHSIFSLSLHHHRRLSSLLSSPPLFSLTFRYLQSLSLPQKTLLIARHLLSSLQPLTRHLNTTSPLSTALTQRDLDAVLLLLLFCETHQHNPETLEAASSDWRQNLSKLFRDRWLTLSCSGIGACTWTVLIPYVETMSRSRKLVGAMGWGGKEVGEVAASAAAVVGLPAVEVKVGGRECVICKEEMGIGRDVCELPCKHLFHWMCILPWLRKRNTCPCCRFRLPSDDVFGEIQRLWEVLVKMGGRELLD 270
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0888 270 SMART ring_2 200 240 IPR001841 -
Glsi11g0888 270 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 115 245 - -
Glsi11g0888 270 SUPERFAMILY RING/U-box 197 246 - -
Glsi11g0888 270 CDD RING-H2_PA-TM-RING 199 241 - -
Glsi11g0888 270 Pfam Ring finger domain 199 241 IPR001841 -
Glsi11g0888 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 247 IPR013083 -
Glsi11g0888 270 ProSiteProfiles Zinc finger RING-type profile. 200 241 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Glsi11g0888 Glsi-ChrGlsi11 5583877 5584689 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0888 2 262 C3H Transcription Factor Family AT5G02750 51.095 1.03e-84 253