Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0880 ATGACGTCCATGGAGATCCCCTTATTCAGCCATTCCGTGGAGCTCCTCCCCCTGTCCCATCACCCATCCCCCATAGACAATGTCTCCTTCACCCTCGCGGAGGTCCTCAAACGCGTCGATGATGCTCAAAACGACAACACCCCACCCCACCGTGTCCTCCATCTTCCTCCCCCTCCCCCTCCTTCCTCTTTCCCCTTTGTTCTCTCCTTCACCAATTTAACTTACAGTGTCAGAGTCCGCCGCAAAATGAGCCTCTCCTCATGCTTCTCTCAAAACCACGTCCTTTCTGAAACCAAGTTCAACGGCACCAAGATTCTCCTCAATCGCATATGCGGGGAGGCCAGAGACGGCGAAATCATGGGCGTTCTCGGCGCCAGTGGTTCCGGTAAATCCACGCTGATCGACGCCCTCGCCGATCGCATTTCCAAGGAGAGCTTGAAAGGCACTGTTACCTTGAACGGCGAAGTTTTGGATTCCAGTCTTCTGAAAGTGATTTCCGCTTATGTCATGCAGGACGACCTTCTCTTTCCCATGCTCACTGTGGAAGAGACGCTCATGTTCTCCGCCGAGTTCAGGCTTCCTCGCTCCCTCTCTAATTCCAAGAAGAAAGCTAGAGTCCAAGCACTCATCGACCAACTGGGTCTCCGGAGCGCCGCCAAAACTGTCATCGGCGACGAAGGACACCGAGGAGTCTCTGGCGGCGAAAGGCGTCGTGTTTCTATTGGAATTGACATCATCCATGACCCCATTATCTTGTTCCTCGACGAGCCCACTTCGGGACTCGACTCCACCAGTGCCTTCATGGTGGTCAAGGTGTTGCAGCGAATTGCTCAAAGTGGAAGCATCGTCATCACGTCCATACACCAACCCAGTTACAGAATCCTTGGCTTATTAGACCGTTTGATTTTTCTCTCCCATGGCCAAACCGTATACAGTGGCTCTCCTGCAAGTCTTCCCCGCTTCTTCTCCCAGTTCGGGCACCCAATACCCGAGAATGAGAACCGGACCGAGTTCGCTCTGGACCTTATTCGTGAACTCGAAGAATCACCCGGTGGAACCCAGAGCTTAGTGGAGTTCAATAAATCATGGCAATTGAATTTGGCGAAAAATAAGGCAACCAACAAATTCCTCAACGGAACACTCAAGGAAGCCATTAGTGCAAGCATTTCCAGAGGTAAATTAGTTTGTGGTGCACCCAGTCATTCCAATCTCTCGACCTCAACGGTTCCAACTTTTGCCAATCCATTTTGGATTGAAATGGCTGTAATAGCGAAACGATCACTTACAAATTCCCATAGAATGCCCGAATTATTCTGTATCCGATTGGGTGCAGTTCTAGTCACCGCAGGCATCTTAGCCACCATCTTTTGGAATCTGGATAATACGCCAAAAGGTGTACAAGAACGTCTGGGATTCTTCGCCTTCGCCATGTCTACCACCTTCTACACCTGCGCCGAGGCCTTCCCCGTCTTCCTTCAAGAGCGATACATATTCATGAGAGAAACTGCTTACAATGCTTACCGTCGTTCCTCCTACGTTCTTGCCCATTCAATCATCTCCATCCCATCATTGGTGTTCCTCTCTTTGGCATTTGCCGCCACCACATTCTGGGCGGTGGGTCTGGCAGGTGGCTCCTCCGGATTCATTTTCTACTTCTTCATAATCTTGGCTTCGTTCTGGGCCGGAAGCTCTTTCGTGACGTTCCTCTCAGGAATAGTTTCGCACGTGATGTTGGGGTTCACAGTGGTGGTTGCAATTCTAGCTTACTTCCTTCTGTTCAGCGGGTTCTTCATCAGCAGAGACAGAATCCCACTGTACTGGATATGGTTTCACTACCTGTCACTGGTGAAGTACCCATACGAGGGGGTTTTGCTGAACGAGTTCAGCGTTCAGCCTCCAAGATGCTTCGTGAGAGGTACTCAGATGTTAGACAACACACCGTTAGGGGGGTTGGCGACGCCATTGAAGGTGGAGTTGCTGAAGAGTATGAGCAAAACGTTGGGAATGAACATCACAAGGTCAACCTGCGTGATCACGGGAGTGGATATACTGAAGCAGCAGGGGATTACAGAGCTAAGCAAATGGAATTGCTTGTGGATAACGGTTGCTTGGGGATTTTTCTTCAGGTTTTTGTTTCATTTGACGTTGCTGTTTGGAAGCAAGAATAAGAGGAGTTAA 2178 0.5009 MTSMEIPLFSHSVELLPLSHHPSPIDNVSFTLAEVLKRVDDAQNDNTPPHRVLHLPPPPPPSSFPFVLSFTNLTYSVRVRRKMSLSSCFSQNHVLSETKFNGTKILLNRICGEARDGEIMGVLGASGSGKSTLIDALADRISKESLKGTVTLNGEVLDSSLLKVISAYVMQDDLLFPMLTVEETLMFSAEFRLPRSLSNSKKKARVQALIDQLGLRSAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPIILFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVITSIHQPSYRILGLLDRLIFLSHGQTVYSGSPASLPRFFSQFGHPIPENENRTEFALDLIRELEESPGGTQSLVEFNKSWQLNLAKNKATNKFLNGTLKEAISASISRGKLVCGAPSHSNLSTSTVPTFANPFWIEMAVIAKRSLTNSHRMPELFCIRLGAVLVTAGILATIFWNLDNTPKGVQERLGFFAFAMSTTFYTCAEAFPVFLQERYIFMRETAYNAYRRSSYVLAHSIISIPSLVFLSLAFAATTFWAVGLAGGSSGFIFYFFIILASFWAGSSFVTFLSGIVSHVMLGFTVVVAILAYFLLFSGFFISRDRIPLYWIWFHYLSLVKYPYEGVLLNEFSVQPPRCFVRGTQMLDNTPLGGLATPLKVELLKSMSKTLGMNITRSTCVITGVDILKQQGITELSKWNCLWITVAWGFFFRFLFHLTLLFGSKNKRS 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0880 725 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 92 331 IPR003439 GO:0005524
Glsi11g0880 725 ProSitePatterns ABC transporters family signature. 231 245 IPR017871 GO:0005524|GO:0016887
Glsi11g0880 725 Pfam ABC-2 type transporter 288 365 IPR043926 GO:0140359
Glsi11g0880 725 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 45 710 - -
Glsi11g0880 725 Gene3D - 96 323 IPR027417 -
Glsi11g0880 725 SMART AAA_5 116 331 IPR003593 GO:0016887
Glsi11g0880 725 Pfam ABC-2 type transporter 422 628 IPR013525 GO:0016020|GO:0140359
Glsi11g0880 725 FunFam ABC transporter G family member 6 96 322 - -
Glsi11g0880 725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 324 IPR027417 -
Glsi11g0880 725 Pfam ABC transporter 112 259 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0880 Glsi-ChrGlsi11 5554030 5556207 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0880 114 291 Calmodulin-binding Proteins AT2G36910 30.939 5.36e-10 61.2