Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0878 ATGGGGAAGGGCGCCCAAAACTATGGCAAACGAGAGGATCTCAGTCCCGAGACTTCGGACGGGGACGTCTTCAAGGCTTGGGCTAAGGATGTGCATGAGTGCGAGGAACATTATAAGGTCAAGGTTAAAACGGGTTTAAGTTCCGATGAGGTCGAGAATCGCCGCCGGATCCATGGTTGGAACGAGTTGGAGAAGCACGAGGGCCAGTCGATTTGGAGTCTCGTCCTTGAGCAGTTTAACGACACATTGGTTCGCATTCTGCTTGCCGCTGCTATAGTTTCCTTCGTGCTGGCTTGGTTCGATGGCGATGAAGGTGGAGAGATGGGGATTACAGCGTTTGTGGAGCCTTTGGTGATATTTTTGATACTGATTGTGAATGCAATTGTGGGAGTTTGGCAAGAGAGCAATGCAGAGAAGGCACTCGAAGCGTTGAAGGAGATTCAGTCAGAGCACGCGACTTTGATTCGTGATAATAAGAAAGTTCCAAATATGCCGGCGAAGGATCTTGTTCCCGGTGATATTGTTCAGCTTAAGGTTGGGGATATGGTGCCTGCTGATATGCGGGTTGTAGAATTGATTAGCTCCACTTTAAGATTGGAACAGGGCTCACTGACCGGTGAGAGTGAAGCAGTGAATAAGACCAACAAGGCTGTTCCCGAGGACGCTGATATTCAAGGTAAGAGATGTATGGTTTTCGCGGGGACAACAGTTGTTAATGGTAATTGCATTTGCTTGGTTACTCAGACGGGCATGGAAACGGAGATTGGGAAGGTGCACCAACAGATACATGTGGCATCTCAAAGCGAGGAGGATACCCCATTGAAGAAGAAGCTCAATGAGTTTGGAGAGATGCTAACTATTATAATTGGAGTAGTATGTGTCTTGGTGTGGCTCATCAACGTTAAGTACTTCCTTTCATGGGAATATGTGGATGGGTGGCCAAGGAACTTTAAGTTTTCGTTTGAGAAGTGCACATATTACTTTGAGATTGCTGTGGCATTGGCTGTTGCTGCTATTCCAGAAGGTTTGCCTGCAGTCATTACAACTTGCCTGGCGCTAGGTACTCGCAAGATGGCTCAGAAGAATGCACTGGTACGAAAACTACCAAGCGTAGAGACTTTGGGTTGTACAACTGTGATCTGTTCAGATAAAACGGGTACATTGACAACAAACCAGATGGCAGTTTCAAAGCTTGTAGCTATTGGTCCTAAGGCAGATGCACTGCGAGCCTTCAAGGTGGAAGGAACTACTTACAATCCATCTGATGGTAAAATAGAGGACTGGCCAACAGGTCGAATGGATGCTAATCTTGAGATGATAGCAAAAATAGCTGCTGTCTGTAATGATGCTGCAGTGACACAATCAGAGCATAAGTTCGTGGCTCATGGAATGCCTACCGAAGCAGCCTTGAAGGTTCTGGTGGAGAAGATGGGCCTTCCCAAAGGAGCCCATGACGTAGGTACAGCAAGTACAAGTACCTTACTACGTTGTTGCGACTGGTGGAATAATCATGACCAGCGGATTGCTACACTTGAGTTTGACCGTGATAGGAAGTCAATGGGTGTTATTGTGAATTCCCGTCTAGGGAAAAAGTCACTTCTAGTAAAGGGTGCTGTAGAAAATTTGTTGGAAAGAAGCTCTAAAATTCAGTTGCGTGATGGTTCCATTGTGAAACTGGATGATAATGCCAAGAACCTTATATTGCAAGCTCTTCATGAAATGTCAACTGGTGCATTACGCTGTTTAGGATTTGCATACAAAGATGAGATTCCTATGTTCGAAAACTACAGCAGTAATGATGATCATCCAGCTCACCAGCTTTTGCTTAACCCTTCCAACTATTCATCAATTGAAAGTGAACTTATATTTGTTGGCATGGTTGGATTGAGGGATCCTCCTAGGGAGGAGGTATACCAGGCAATTGAGGACTGCAGAGCAGCTGGAATTCGTGTTATGGTAATTACTGGAGACAACAAGAACACAGCAGAAGCTATATGTCGTGAAATAGGTGTATTTGGATCTCATGAAGACATTAGTTTGAAAAGTTTAACTGGGAAAGATTTTATGGAGCTGCGTGATAAAAAATCCCACCTGAGACAGAGTGGTGGACTTTTGTTTTCAAGGGCTGAACCTAGGCACAAACAAGATATTGTGAGGTTGCTCAAGGAGGAAGGGGAAGTGGTTGCCATGACTGGAGATGGTGTGAATGATGCACCTGCCTTGAAGCTTGCTGATATTGGCATTGCAATGGGCATTGCAGGGACAGAGGTGGCAAAGGAAGCTTCAGATATGGTATTGGCTGATGATAATTTTAGTACAATTGTTGCTGCTGTTGGTGAAGGCAGATCTATCTACAATAACATGAAGGCTTTTATCAGGTACATGATATCTTCGAATATTGGCGAGGTTGCCTCTATATTTTTAACGGCTGCATTAGGTATTCCTGAAGGATTGATACCTGTCCAGCTATTGTGGGTCAATCTAGTCACAGACGGACCACCTGCTACAGCTTTGGGATTTAACCCTCCAGATAAGGATATAATGAAGAAGCCTCCCCGTCGTAGTGATGACTCACTAATTAATGCTTGGATTTTATTCCGCTATCTGGTTATTGGGATGTATGTTGGGTTAGCTACAGTTGGTGTTTTCATCATATGGTATACTCATGGTTCTTTCTTGGGTATTGACCTGGCCAAGGATGGTCATACTGTTGTCACTTATTCCCAACTTGCCAACTGGGGTCACTGCTCCTCGTGGAAGAATTTCTCTGCTTCTCCGTTCACAGCAGGTGATAGAGTCGTCTCTTTTGATAATGGCCCCTGTGACTATTTCAAAACTGGAAAAGTCAAAGCTATGACGCTCTCCCTCTCTGTGTTGGTAGCCATTGAAATGTTCAATTCCCTCAATGCCCTTTCTGAGGATGGAAGCCTTCTGACAATGCCGCCTTGGGTTAATCCTTGGCTTCTATTGGCAATGTCTGTGTCATTTGGTCTGCACTTCTTGATAATGTATGTGCCATTCTTAGCACAAATATTTGGCATCGTGCCCCTCAGCTTCAATGAGTGGCTTTTGGTTTTGGTGGTTGCATTACCTGTGATTCTAATTGACGAGATTCTGAAATTTGTGGGGAGGTGTACAAGTGGGTCTCAATCATCGAGTGCAAGAAAATCTAAGCAAAAATCAGAGTAG 3189 0.4468 MGKGAQNYGKREDLSPETSDGDVFKAWAKDVHECEEHYKVKVKTGLSSDEVENRRRIHGWNELEKHEGQSIWSLVLEQFNDTLVRILLAAAIVSFVLAWFDGDEGGEMGITAFVEPLVIFLILIVNAIVGVWQESNAEKALEALKEIQSEHATLIRDNKKVPNMPAKDLVPGDIVQLKVGDMVPADMRVVELISSTLRLEQGSLTGESEAVNKTNKAVPEDADIQGKRCMVFAGTTVVNGNCICLVTQTGMETEIGKVHQQIHVASQSEEDTPLKKKLNEFGEMLTIIIGVVCVLVWLINVKYFLSWEYVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVSKLVAIGPKADALRAFKVEGTTYNPSDGKIEDWPTGRMDANLEMIAKIAAVCNDAAVTQSEHKFVAHGMPTEAALKVLVEKMGLPKGAHDVGTASTSTLLRCCDWWNNHDQRIATLEFDRDRKSMGVIVNSRLGKKSLLVKGAVENLLERSSKIQLRDGSIVKLDDNAKNLILQALHEMSTGALRCLGFAYKDEIPMFENYSSNDDHPAHQLLLNPSNYSSIESELIFVGMVGLRDPPREEVYQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFGSHEDISLKSLTGKDFMELRDKKSHLRQSGGLLFSRAEPRHKQDIVRLLKEEGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLINAWILFRYLVIGMYVGLATVGVFIIWYTHGSFLGIDLAKDGHTVVTYSQLANWGHCSSWKNFSASPFTAGDRVVSFDNGPCDYFKTGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLIMYVPFLAQIFGIVPLSFNEWLLVLVVALPVILIDEILKFVGRCTSGSQSSSARKSKQKSE 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0878 1062 SFLD p-type atpase 362 783 IPR044492 -
Glsi11g0878 1062 SMART Cation_ATPase_N_a_2 25 99 IPR004014 -
Glsi11g0878 1062 PRINTS P-type cation-transporting ATPase superfamily signature 381 395 - -
Glsi11g0878 1062 PRINTS P-type cation-transporting ATPase superfamily signature 200 214 - -
Glsi11g0878 1062 PRINTS P-type cation-transporting ATPase superfamily signature 755 767 - -
Glsi11g0878 1062 PRINTS P-type cation-transporting ATPase superfamily signature 731 750 - -
Glsi11g0878 1062 PRINTS P-type cation-transporting ATPase superfamily signature 625 636 - -
Glsi11g0878 1062 PRINTS P-type cation-transporting ATPase superfamily signature 647 657 - -
Glsi11g0878 1062 SUPERFAMILY HAD-like 379 835 IPR036412 -
Glsi11g0878 1062 PANTHER CALCIUM-TRANSPORTING ATPASE 27 1054 - -
Glsi11g0878 1062 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 388 629 IPR023299 GO:0000166
Glsi11g0878 1062 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 795 1050 - -
Glsi11g0878 1062 FunFam Calcium-transporting ATPase, putative 127 263 - -
Glsi11g0878 1062 Gene3D - 391 632 IPR023299 GO:0000166
Glsi11g0878 1062 Pfam haloacid dehalogenase-like hydrolase 378 745 - -
Glsi11g0878 1062 Gene3D - 44 265 - -
Glsi11g0878 1062 SFLD Haloacid Dehalogenase 362 783 - -
Glsi11g0878 1062 Pfam Cation transporter/ATPase, N-terminus 27 94 IPR004014 -
Glsi11g0878 1062 Gene3D - 378 776 IPR023214 -
Glsi11g0878 1062 Coils Coil 137 157 - -
Glsi11g0878 1062 Pfam E1-E2 ATPase 147 361 - -
Glsi11g0878 1062 Pfam Cation transporting ATPase, C-terminus 816 1042 IPR006068 -
Glsi11g0878 1062 NCBIfam HAD-IC family P-type ATPase 705 812 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi11g0878 1062 NCBIfam HAD-IC family P-type ATPase 320 402 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi11g0878 1062 NCBIfam HAD-IC family P-type ATPase 118 308 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi11g0878 1062 SUPERFAMILY Calcium ATPase, transduction domain A 150 260 IPR008250 -
Glsi11g0878 1062 ProSitePatterns E1-E2 ATPases phosphorylation site. 383 389 IPR018303 -
Glsi11g0878 1062 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 235 396 - -
Glsi11g0878 1062 Gene3D - 77 1044 - -
Glsi11g0878 1062 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 1045 IPR023298 -
Glsi11g0878 1062 FunFam Calcium-transporting P-type ATPase, putative 625 776 - -
Glsi11g0878 1062 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 391 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0878 Glsi-ChrGlsi11 5544368 5550445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0878 1 1062 Primary Pumps ATPases(2) AT1G07670 79.116 0.0 1736