Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0871 ATGGGAAACGCACATGGCCATCGCATACACCGTAACGCCGTTCCTCCGGGCTATAAATATGATGCGCCCGCTCAGGCTCACCCTCAAATCCCAAGCTCAGCTCATACAACCCACAACCAGGTTAGTTCCAGAATGCTGTCTTTACCTTATTCTCACGTCGACCACAGTTTACGAGCTCTCGCCGGCCAAGCCGAAGGCTTTGGTCGCTTTGCAATCGGTGGTCTTCATGGTCCCCTTTATCACGTCATCAATCTAGCAGATGATGGACCAGGATCGCTACGTGAAGCATGTCGCAGAAAAGAACCATTGTGGATTGTATTTAAGGTTTCAGGCACTATTCATCTTTCATCCTACTTGAGTGTGTCATCTTACAAGACCATTGATGGCCGGGGCCAAAGGATTAAACTCACTGGAAAGGGTTTGCGGCTGAAGGAATGTGAACATGTAATAATTTGCAATTTGGAGTTAGAAGGCGGTAGAGGACCCGATGTTGATGGCATTCAGATCAAACCTAAATCAAAGCACATATGGATAGATCGATGTAGCCTCCGTGATTTTGACGATGGACTGATAGATATCACGCGAGAAAGCACAGATATTACTATTTCTAGGTGTCACTTTTCTCAGCATGACAAAACAATGCTCATTGGGGCAGATCCCTCGCACATCGATGATAGATGCATCAGGGTCACTATTCACCATTGCTTTTTTGATGGGACGCGACAGCGGCATCCTCGTGTTAGATTTGCAAAAGTACATCTGTACAATAATTACACCAGAAACTGGGGCATATATGCTGTTTGTGCAAGTGTGGAAGCACAGATATACTCGCAATGTAATATCTATGAAGCAGGGCAGAAGAAGGTGGCATTTAAGTATCTTTCTGAAAGGGCAGCAGACAAGGAGGCGGCAGCAACTGGTCACATAAGGTCTGAAGGAGACTTATTTGTGAATGGATCTCAGGCAGGGTTAATGAGTGAGAGTGTGGAATGTACCATGTTTCATCCTAGCGAGTACTACACAACGTGGACGTTTGCTCCTCCTATACATGATCTAAAACAGCTTCTTCATCACCATACTGGATGGCAATGTCTTGCACAGCCTCCAGATCAACCATTGGCTGCATAG 1128 0.4592 MGNAHGHRIHRNAVPPGYKYDAPAQAHPQIPSSAHTTHNQVSSRMLSLPYSHVDHSLRALAGQAEGFGRFAIGGLHGPLYHVINLADDGPGSLREACRRKEPLWIVFKVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLELEGGRGPDVDGIQIKPKSKHIWIDRCSLRDFDDGLIDITRESTDITISRCHFSQHDKTMLIGADPSHIDDRCIRVTIHHCFFDGTRQRHPRVRFAKVHLYNNYTRNWGIYAVCASVEAQIYSQCNIYEAGQKKVAFKYLSERAADKEAAATGHIRSEGDLFVNGSQAGLMSESVECTMFHPSEYYTTWTFAPPIHDLKQLLHHHTGWQCLAQPPDQPLAA 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0871 375 SUPERFAMILY Pectin lyase-like 61 365 IPR011050 -
Glsi11g0871 375 MobiDBLite consensus disorder prediction 1 38 - -
Glsi11g0871 375 PRINTS Pollen allergen Amb family signature 118 134 IPR018082 -
Glsi11g0871 375 PRINTS Pollen allergen Amb family signature 265 284 IPR018082 -
Glsi11g0871 375 PRINTS Pollen allergen Amb family signature 63 80 IPR018082 -
Glsi11g0871 375 SMART amb_all 110 288 IPR002022 -
Glsi11g0871 375 PANTHER PECTATE LYASE 18-RELATED 51 326 IPR045032 GO:0030570
Glsi11g0871 375 Pfam Pectate lyase 119 281 IPR002022 -
Glsi11g0871 375 Gene3D - 49 348 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0871 Glsi-ChrGlsi11 5494089 5496833 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0871 85 370 Polysaccharide Lyase AT3G55140 77.972 7.83e-173 482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi11g0871 11 5494089 5496833 Glsi11g0871 11 5494089 5496833 ECH