Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0865 ATGTGGCTCAATCTGAAGAAGATTCAGGCACTGGAGCTGCAGCTGGGTTTGTTCATCAAACGATCTTCTTCGTTTGAGACACTACCAGGAGGAGAGAGAGAGAAAGAGGTTGCAGCGCGCGTTGGTGGTTCGATAACTCTGCGCGTCAATCCAGAAATGGCGAGGATAAAGGTACACGATCTGAGGAATAAAACTAAGGCAGAGCTACTGAACCAGTTGAAAGATCTCAAGGCGGAGCTCGCTCTACTCCGTGTCGCCAAAGTCACCGGCGGTGCCGCTAACAAGCTCTCAAAGATAAAGGTGGTGAGGCTGTCAATAGCGCAGGTATTAACTGTGATTTCCCAGAAGCAGAAATCGGCACTAAGGGAGGCTTACAAAAATAAAAAGTATTTGCCTCTTGATCTCCGTCCCAAAAAGACCCGAGCCATTCGCAGACGTCTCACCAAACACCAGGCATCATTGAAGACAGAACGGCAGAAGAAGAAGGAGACGTACTTTCCAATACGAAAGTATGCCATCAAAGTGTAG 528 0.4811 MWLNLKKIQALELQLGLFIKRSSSFETLPGGEREKEVAARVGGSITLRVNPEMARIKVHDLRNKTKAELLNQLKDLKAELALLRVAKVTGGAANKLSKIKVVRLSIAQVLTVISQKQKSALREAYKNKKYLPLDLRPKKTRAIRRRLTKHQASLKTERQKKKETYFPIRKYAIKV 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0865 175 Pfam Ribosomal L29 protein 60 116 IPR001854 GO:0003735|GO:0005840|GO:0006412
Glsi11g0865 175 SUPERFAMILY Ribosomal protein L29 (L29p) 56 117 IPR036049 GO:0003735|GO:0005840|GO:0006412
Glsi11g0865 175 FunFam 60S ribosomal protein L35 130 175 - -
Glsi11g0865 175 PANTHER 60S RIBOSOMAL PROTEIN L35 53 175 IPR045059 GO:0000463|GO:0022625
Glsi11g0865 175 Gene3D - 130 175 - -
Glsi11g0865 175 Coils Coil 59 86 - -
Glsi11g0865 175 Hamap 50S ribosomal protein L29 [rpmC]. 56 116 IPR001854 GO:0003735|GO:0005840|GO:0006412
Glsi11g0865 175 NCBIfam 50S ribosomal protein L29 60 116 IPR001854 GO:0003735|GO:0005840|GO:0006412
Glsi11g0865 175 CDD Ribosomal_L29_HIP 60 116 - -
Glsi11g0865 175 FunFam 60S ribosomal protein L35 53 129 - -
Glsi11g0865 175 Gene3D - 53 129 IPR036049 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0865 Glsi-ChrGlsi11 5453886 5456651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0865 53 175 Cytoplasmic Ribosomal Protein Gene Family AT3G09500 89.431 6.28e-72 211