Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0856 ATGGAGACGCAGCGAATTATCGAGTTGCCGCATCAGAACATGGACAAGCGGCCCAGGAAGAGGCCTCGTTTAACATGGGATATGCCCCCTCATCTTCCTCCACCTCCTAAGGTTCTTCCTGCTATATATTGCGGCCAGGAACTTGGGAATGGAGTGGTTCCAAATCATGCATATTCTTCCATGTTTTACAAGGGAGTGCCTTGCAATGGATCACCCCCCTGGAGACCAGACGATAAAGATGGTCACTACGTTTTTGCTGTTGGAGAAAATTTAACTTCTCGATATAGAATTCTCAATAAAATGGGTGAAGGGACATTTGGCCAAGTCTTGGAATGTTTTGACAATGACATGAAAGAAGTTGTGGCAATCAAAATTGTTCGCTCCATACACAAGTATCGTGAGGCTGCAATGATTGAAATTGAGGTCCTGCAGAGGCTTGCTAGGCATGATGTTGGTGGTGGACGTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTGTATTTGAGAAGCTTGGGCCAAGCTTATACGATTTTCTTCGCAAAAACAGCTATCGTTCTTTTCCCATTGATCTTGTTCGGGAGTTTGGCAGACAACTTTTGGAGTCTGTAGCATTTATGCATGATTTACGTTTGATTCACACTGATTTGAAGCCAGAGAATATTCTTCTTGTCTCGTCAGATTATATTAAAGTGCCAGACTACAAGTTTTTATCACGGACCACAAAAGAGGGTTCCTATTTCAAGAACCTACCTAAGTCAAGTTCCATTAAGCTCATCGATTTTGGGAGTACAACATTTGAACATCAGGACCACAGTTATGTGGTATCAACTAGACACTATCGTGCACCCGAGGTTATCCTAGGTCTTGGGTGGAACTCTCCTTGCGATCTTTGGAGCGTGGGTTGCATACTGGTTGAACTCTGCTCTGGTGAGGCCCTTTTTCAAACTCACGAGAACTTAGAACATCTTGCCATGATGGAGAGAGTTTTAGGGCCACTACCTCAACATATGGTGGTCAGGGTTGACTGTCGAGCTGAGAAGTATTTTAGAAGGGGTGCACGATTGAGTTGGCCAGATAGTTCAACTTCAAGAGAAAGCATGAGGGCAGTTTGGAAATTGCCTCGCTTGCCGAATCTGATAATGCAGCACGTTGATCATTCTGGTGGCGATTTGATTGATCTCCTGCAAGGACTCCTACGATATGACCCTGCCGATCGACTCAAAGCAAGGGAAGCATTAAGACATCCCTTCTTCACAAGAGATCCTAAACGATATGGTTGCCCCTTATAA 1305 0.4406 METQRIIELPHQNMDKRPRKRPRLTWDMPPHLPPPPKVLPAIYCGQELGNGVVPNHAYSSMFYKGVPCNGSPPWRPDDKDGHYVFAVGENLTSRYRILNKMGEGTFGQVLECFDNDMKEVVAIKIVRSIHKYREAAMIEIEVLQRLARHDVGGGRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREFGRQLLESVAFMHDLRLIHTDLKPENILLVSSDYIKVPDYKFLSRTTKEGSYFKNLPKSSSIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNSPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPQHMVVRVDCRAEKYFRRGARLSWPDSSTSRESMRAVWKLPRLPNLIMQHVDHSGGDLIDLLQGLLRYDPADRLKAREALRHPFFTRDPKRYGCPL 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0856 434 SMART serkin_6 95 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g0856 434 SUPERFAMILY Protein kinase-like (PK-like) 82 427 IPR011009 -
Glsi11g0856 434 CDD PKc_CLK 82 423 - -
Glsi11g0856 434 Pfam Protein kinase domain 95 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g0856 434 Gene3D Transferase(Phosphotransferase) domain 1 149 423 - -
Glsi11g0856 434 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Glsi11g0856 434 Gene3D Phosphorylase Kinase; domain 1 82 175 - -
Glsi11g0856 434 FunFam Serine/threonine-protein kinase AFC2 171 423 - -
Glsi11g0856 434 MobiDBLite consensus disorder prediction 9 26 - -
Glsi11g0856 434 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 2 427 - -
Glsi11g0856 434 ProSiteProfiles Protein kinase domain profile. 95 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi11g0856 434 FunFam Serine/threonine-protein kinase AFC2 82 175 - -
Glsi11g0856 434 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0856 Glsi-ChrGlsi11 5400180 5404676 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0856 95 429 Core Cell Cycle Gene Families AT1G76540 27.011 9.01e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Glsi11g0856 Pkinase 1.5e-48 CL0016