Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0853 ATGAAGAGACAGAGAGTTATCGAAGGAATAGAGAGTTTCGACATAGCCAATTGTCTAATGCTTCTCTCTCATGCCCAAGATATTAGAAAGCCCCACAAAAACGTTGAATTTGAGTGCAAGACTTGCAACCGCAAGTTCCCGTCGTTTCAGGCACTCGGGGGTCACAGGGCTAGCCACAAGAGGCCGAAACTAGATGGGGATGATGAACTCAAAGCACAGGCTAAGTCTCTGAGCTTAGCCACATCTAAACCCAAAGTGCACGAGTGCTCCATTTGTGGTCTGGAGTTCTCTCTGGGCCAAGCCCTGGGTGGTCACATGAGGAGGCATAGAGCTGACGCCAACCAAGGCTTTTCTTCCATAAACAAGGTCGTCCTTCCAAAACTCCCAGTTCTAAAGAGATCCAATAGCAAAATTAAGGTTTTGTGCCTCGACCTCAACTTGACACCTCTCGAGAACGACTTGAAGCTGTTGTTCGGAAAGATGGCACCTAAAGTTGATGCCTGCGTCTGA 510 0.4804 MKRQRVIEGIESFDIANCLMLLSHAQDIRKPHKNVEFECKTCNRKFPSFQALGGHRASHKRPKLDGDDELKAQAKSLSLATSKPKVHECSICGLEFSLGQALGGHMRRHRADANQGFSSINKVVLPKLPVLKRSNSKIKVLCLDLNLTPLENDLKLLFGKMAPKVDACV 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0853 169 Pfam C2H2-type zinc finger 37 62 - -
Glsi11g0853 169 Pfam C2H2-type zinc finger 86 111 - -
Glsi11g0853 169 SUPERFAMILY beta-beta-alpha zinc fingers 37 109 IPR036236 -
Glsi11g0853 169 PANTHER ZINC FINGER PROTEIN ZAT5 13 153 - -
Glsi11g0853 169 Gene3D Classic Zinc Finger 34 109 - -
Glsi11g0853 169 SMART c2h2final6 87 109 IPR013087 -
Glsi11g0853 169 SMART c2h2final6 37 59 IPR013087 -
Glsi11g0853 169 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Glsi11g0853 169 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Glsi11g0853 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
Glsi11g0853 169 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0853 Glsi-ChrGlsi11 5381701 5382210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0853 1 166 C2H2 Transcription Factor Family AT2G37430 48.588 1.17e-49 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi11g0853 zf-C2H2_6 1.8e-10 CL0361