Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi11g0848 ATGGGTGCAAGAGCTACGGCAGCAAGCTGTGGTGATATATTCCTCATCAAGCTTGGTGCTGAGGGACTGCTATATCTCGAGCCTGCCTTTGTAAGGATGGTTAGGGTCAGTGTCTTGAATGATGCGTTAAAGAGCATGTACAATGCTGAGAAGCGAGGAAAGCGGCAAGTCATGATTAGACCTTCATCGAAGGTTATCATCAAGTTTCTTCTGGTCATGCAAAAGCATGGATACATTGGTGAGTTTGAGTATGTTGATGATCATAGAGCTGGAAAAATTGTCGTTGAACTTAATGGAAGGCTGAACAAATGTGGAGTTATCAGCCCTCGTTTTGATGTTGGTGTCAAAGATATTGAGCCATGGACGGCTAGATTGCTTCCCTCCCGACAGTTTGGATATATTGTTTTGACGACTTCTGCGGGCATCATGGATCACGAGGAAGCTAGGCGGAAAAATGTCGGCGGAAAGGTTCTTGGTTTCTTTTACTAG 489 0.4479 MGARATAASCGDIFLIKLGAEGLLYLEPAFVRMVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKDIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi11g0848 162 SUPERFAMILY Ribosomal protein S8 36 162 IPR035987 GO:0003735|GO:0005840|GO:0006412
Glsi11g0848 162 Gene3D - 102 162 - -
Glsi11g0848 162 FunFam 40S ribosomal protein S15a 102 162 - -
Glsi11g0848 162 FunFam 40S ribosomal protein S15a 33 101 - -
Glsi11g0848 162 PANTHER 40S RIBOSOMAL PROTEIN S15A 33 161 IPR000630 GO:0003735|GO:0005840|GO:0006412
Glsi11g0848 162 Gene3D - 33 101 - -
Glsi11g0848 162 Hamap 30S ribosomal protein S8 [rpsH]. 34 162 IPR000630 GO:0003735|GO:0005840|GO:0006412
Glsi11g0848 162 Pfam Ribosomal protein S8 39 162 IPR000630 GO:0003735|GO:0005840|GO:0006412
Glsi11g0848 162 ProSitePatterns Ribosomal protein S8 signature. 132 149 IPR000630 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi11g0848 Glsi-ChrGlsi11 5340622 5343937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi11g0848 33 162 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 96.154 1.33e-91 260